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. 2018 May 8;19(Suppl 6):153. doi: 10.1186/s12859-018-2129-y

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© The Author(s) 2018

Open Access This article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated.

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Fig. 6 — Weight calculation and |X| on S100. Average and standard error of (a) the time it takes to score a single tripartition using Eq. 3 and (b) search space size |X| are shown for both ASTRAL-II and ASTRAL-III on the S100 dataset. Running time is in log scale. We vary numbers of gene trees (boxes) and sequence length (200 and 1600). See Additional file 1: Figure S3 for similar patterns for with 400 and 800bp alignments