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. Author manuscript; available in PMC: 2018 Sep 1.
Published in final edited form as: Nat Protoc. 2018 Feb 8;13(3):478–494. doi: 10.1038/nprot.2017.146

Figure 3. Chemical cross-links mapped onto the resulting comparative open protein-protein model of the HOP2-MND1 heterodimeric complex.

Figure 3

The distances between the cross-linked residues are depicted on the calculated structure. (a) A model of an ‘open’ conformation that is most similar to the template structure 4y66, with 45 matching interprotein cross-links shown in green. (b) The 22 incompatible cross-links shown in orange indicate the existence of a closed conformation. a adapted with permission from ref. 8, Copyright 2015 American Chemical Society.