Table 1.
Summary comparison of the models designed for S. lividans
| iJV710 | iJV1220 | |
|---|---|---|
| Number of genes | 0 (710)a | 1220b |
| Number of reactions | 713 | 1446 |
| Number of metabolites | 502 | 1867 |
| Mass balanced | No | Yes |
| Amylase | Yes | Yes |
| Agarase | Yes | Yes |
| mRNA decay | No | Yes |
| Branched-chain fatty acids | No | Yes |
| Menaquinone biosynthesis | No | Yes |
| Updated biomass equation | No | Yes |
| Updated energy parameters | No | Yes |
aThe model contains no gene information, 710 genes are assumed since it is based on iIL708 and adds reactions corresponding to 2 new genes
biJV1220 is based on iMK1208, removing 4 genes, and adding genes for amlB, dagA, RNAse, PNPase and the secretion complexes