Table 2.

GO terms of biological process classification of DEGs in leaves and roots

LF-specific 1/0d	GO ID	Up	Down	RT-specific 1/0d	GO ID	Up	Down
Organonitrogen compound metabolic	GO:1901564	148	261	Cell wall organization or biogenesis	GO:0071554	229	3
Pigment metabolic process	GO:0042440	27	65	Cell division	GO:0051301	184	5
Chlorophyll metabolic process	GO:0015994	15	35	External encapsulating structure organization	GO:0045229	198	3
Small molecule metabolic process	GO:0044281	214	361	Carbohydrate metabolic process	GO:0005975	365	8
Photosynthesis	GO:0015979	10	84	Cell cycle	GO:0007049	208	5
Common 1/0d
Single-organism metabolic process	GO:0044710	456	664			745	39
Small molecule biosynthetic process	GO:0044283	82	149			158	8
Carbohydrate biosynthetic process	GO:0016051	49	80			102	1
Organic hydroxy compound biosynthetic	GO:1901617	23	45			54	3
Lipid metabolic process	GO:0006629	128	177			202	12
LF-specific 3/0d	GO ID	Up	Down	RT-specific 3/0d	GO ID	Up	Down
DNA-templated transcription	GO:0006351	221	128	Jasmonic acid mediated signaling pathway	GO:0009867	19	4
RNA biosynthetic process	GO:0032774	221	128	Cellular response to oxygen-containing compound	GO:1901701	47	14
Heterocycle biosynthetic process	GO:0018130	242	139	Defense response to bacterium	GO:0042742	29	5
Aromatic compound biosynthetic process	GO:0019438	261	142	Cellular response to jasmonic acid stimulus	GO:0071395	19	4
Organic cyclic compound biosynthetic	GO:1901362	267	145	Cellular response to acid chemical	GO:0071229	33	12
Common 3/0d
Response to organonitrogen compound	GO:0010243	54	9			34	3
Response to endogenous stimulus	GO:0009719	194	69			121	29
Response to oxygen-containing compound	GO:1901700	162	50			106	26
Defense response	GO:0006952	141	31			69	22
Response to organic substance	GO:0010033	200	78			126	30