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. 2018 Jun 11;6:e4967. doi: 10.7717/peerj.4967

Table 1. Simulations, force fields and salt bridge stabiliy.

The table shows the stability of each of the three salt bridges, reported as the population of structures with N–O distances shorter than 5 Å, in each of the eight different combinations of force field and water models.

Force field Water model dmax Population
K12–E23 K39–D35 K58–D55
CHARMM22 TIPS3P 13.5 Å 0.73 0.42 0.61
CHARMM22 TIP3P 13.5 Å 0.67 0.20 0.61
CHARMM27 TIPS3P 13.5 Å 0.83 0.14 0.75
Amber ff03w TIP4P/2005 13.5 Å 0.60 0.48 0.81
Amber ff99SB-ILDN TIP3P 13.5 Å 0.63 0.72 0.98
OPLS AA SPC/E 13.5 Å 0.65 0.39 0.98
a99SB-disp TIP4P-D 13.0 Å 0.67 0.25 0.68
AMBER ff15ipq SPC/Eb 14.0 Å 0.096 0.20 0.02