Table 2.
HPV detection method | HPV-genomic regions targeted by the primer sets | Amplicon size | Included controls | HPV genotypes detected | LODa |
---|---|---|---|---|---|
SPF10LiPA25
(strip-based reverse hybridization) |
L1 | 65 bp | External: | HPV 6, 11, 16, 18, 31, 33, 34, 35, 39, 40, 42, 43, 44, 45, 51, 52, 53, 54, 56, 58, 59, 66, 68, 70, and 74 | 1:100.000b |
SiHa cells | |||||
Pure paraffin samples | |||||
Cytolomegavirus (CMV) control | |||||
HPV 18 positive and HPV-negative PCR control | |||||
HPV-positive + borderline + negative DNA enzyme immunoassay control | |||||
Internal: | |||||
None | |||||
Semi-quantitative- PCR (semi-Q-PCR) |
E6/E7 | 82–134 bp | External: | HPV 16, 18, 31, 33, 35, 39, 45, 51, 52, 56, 58, and 59 | Not measured |
CMV control | |||||
Pure paraffin sample | |||||
HPV-positive control for the specific HPV genotype tested for in each Q-PCR | |||||
Internal: | |||||
Glyceraldehyde-3-phosphate dehydrogenase (DNA control) |
aLimit of detection.
bBased on dilutions of SiHA cell lines, which contain 1–2 HPV 16 copies per cell line.