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. 2018 Jun 8;8:209. doi: 10.3389/fonc.2018.00209

Table 2.

Characteristics of the PCR-based human papillomavirus (HPV) assays.

HPV detection method HPV-genomic regions targeted by the primer sets Amplicon size Included controls HPV genotypes detected LODa
SPF10LiPA25
(strip-based reverse hybridization)
L1 65 bp External: HPV 6, 11, 16, 18, 31, 33, 34, 35, 39, 40, 42, 43, 44, 45, 51, 52, 53, 54, 56, 58, 59, 66, 68, 70, and 74 1:100.000b
SiHa cells
Pure paraffin samples
Cytolomegavirus (CMV) control
HPV 18 positive and HPV-negative PCR control
HPV-positive + borderline + negative DNA enzyme
immunoassay control
Internal:
None

Semi-quantitative-
PCR (semi-Q-PCR)
E6/E7 82–134 bp External: HPV 16, 18, 31, 33, 35, 39, 45, 51, 52, 56, 58, and 59 Not measured
CMV control
Pure paraffin sample
HPV-positive control for the specific HPV genotype
tested for in each Q-PCR
Internal:
Glyceraldehyde-3-phosphate dehydrogenase
(DNA control)

aLimit of detection.

bBased on dilutions of SiHA cell lines, which contain 1–2 HPV 16 copies per cell line.