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. 2018 Jun 8;9:1188. doi: 10.3389/fmicb.2018.01188

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Copyright © 2018 Lay, Bell, Hamel, Harker, Mohr, Greer, Yergeau and St-Arnaud.

This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.

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Co-inertia analysis showing the relationship between rhizosphere bacterial and fungal core and eco microbiomes in (A) canola grown as recommended (Can_RE), (B) canola fertilized at 150% of the recommended rate (Can_HF), and (C) canola seeded at 150% of the recommended rate (Can_HD). For each treatment, the top graph is the projection of both bacterial and fungal operational taxonomic units (OTUs) onto the co-inertia plane. The cumulative projective inertias for the first two axes were (A) 92.58%, (B) 96.49%, and (C) 95.88% of the total variation. The label abbreviations are as follows: BL, Beaverlodge; BD, Brandon; LA, Lacombe. Arrow length is proportional to the difference between the ordinations of the two data sets: longer arrows denote less concordance between the two assemblage data sets. The two lower panels are the projection of fungi (left panel) and bacteria (right panel) onto the co-inertia plane for each treatment. The abbreviations for bacterial and fungal species are as follows: Ar, Arthrobacter sp.; Bl, Blastococcus sp.; Cr, Cryococcus sp.; Jl, Janthinobacterium lividum; Ka, Kaistobacter sp.; Ps, Pseudomonas sp.; Sn, Stenotrophomonas sp.; Sp, Serratia proteamaculans; Tr, Terracoccus sp.; Fc, Fusicolla sp.; Fm, Fusarium merismoides; Hn, Humicola nigrescens; Ob, Olpidium brassicae; Mn, Monographella cucumerina; Mt, Mortierella sp.; Na, Nectria ramulariae; uf, unclassified fungus. The RV coefficients are the values of the multivariate generalization of the squared Pearson correlation coefficient. P indicates the P-values of each analysis.