. Author manuscript; available in PMC: 2019 Feb 7.

Published in final edited form as: Trends Genet. 2018 Feb 7;34(2):142–157. doi: 10.1016/j.tig.2017.11.005

Table 2.

Category	Nuclear-retained lncRNA names and references
Transcription activation	PINCR[49], MANTIS[25], lncKdm2b[12], Linc-RAM[50], LncPRESS1[28], upperhand (UPH)[63], HOTAIRM1[13], RMRP[39], Linc-RoR[29], HoxBlinc[14], DEANR1[156], MEG3[23], lncTCF7[26], myheart(mhrt)[30], BCAR4[32], HERVH[37], THRIL[40], Dali[20], LincRNA-p21[157], alncRNA-EC7[158], PACER[35], Paupar[47], lincRNA-Cox2(also repression)[53], HOXD-AS1[54], RBM5-AS1/LUST[38], Evx1as[159], Khps1[19], TARID[160], TERRA[34], SLERT [56]
Transcription repression	HAUNT/Gm15055[22, 44], lincRNA-EPS[51], PAPAS[17, 24], PARTICLE[15], TUG1[161], Oct4P4[18], Evf2/Dlx6as[162], lncRNA-CD244[163], PANDA[52], APTR[145], ANRASSF1[164], H19[21], SChLAP1[31], lincRNA-Cox2(also activation)[53], GNG12-AS1[165], APOA1-AS[45], AS1DHRS4[16]
Post-transcriptional regulation	HOTAIR (ubiquitinylation)[166], Linc-RoR (c-myc stability [167]and p53 translation[168]), asFGFR2 (splicing)[27], Pnky (splicing)[64], MALAT1 (pre-mRNA splicing) UCA1 (p16^INK stability)[169], lincRNA-p21 (translation)[170]
Other regulations:	HAUNT/Gm15055 (DNA locus)[44], Xist (XCI)[9], Neat1 (paraspeckle and pri-miR processing)[9, 80], Firre (Nuclear Organization)[48, 144], DDSR (homologous recombination)[171], TERRA (telomere stability)[34], AluRNA (nucleolar structure) [58]