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. 2018 Mar 22;19(9):940–948. doi: 10.1002/cbic.201700621

Table 1.

X‐ray data collection and refinement statistics for C. roseus vitrosamine synthase.

Data collection
beamline I02, Diamond Light Source, UK
wavelength [Å] 0.9795
detector Pilatus 6M
resolution range[a] [Å] 55.30–1.55 (1.59–1.55)
space group P212121
cell parameters [Å] a=58.83, b=61.02, c=162.03
total no. of measured intensities[a] 761 897 (28 422)
unique reflections[a] 85 013 (6006)
multiplicity[a] 9.0 (4.7)
mean I/σ(I)[a] 17.0 (1.5)
completeness[a] [%] 99.5 (96.5)
R merge [a,b] 0.076 (1.120)
R meas [a,c] 0.090 (1.255)
CC
1/2
[a,d]
0.997 (0.614)
Wilson B value [Å2] 28.8
Refinement
resolution range[a] [Å] 55.30–1.55 (1.59–1.55)
reflections: working/free[e] 80 707/4304
R work/R free [a,f] 0.169/0.190 (0.382/0.379)
Ramachandran: favoured/allowed/disallowed[g] [%] 98.3/1.7/0.0
RMSD of bond distance [Å] 0.010
RMSD of bond angle [°] 1.50
no. of protein residues (ranges): chains A/B 282 (7–103; 115–299)/283 (7–107; 118–299)
no. of water molecules/NADP+ molecules 397/2
mean B factors: protein/water/NADP+/overall [Å2] 38.2/44.6/27.4/38.6
PDB ID 5O98

[a] Figures in parentheses indicate values for the outer resolution shell. [b] R merge=∑hkli|Ii(hkl)−⟨I(hkl)⟩|/∑hkli Ii(hkl). [c] R meas=∑hkl [N/(N−1)]1/2×∑i|Ii(hkl)−⟨I(hkl)⟩|/∑hkli Ii(hkl), where Ii(hkl) is the ith observation of reflection hkl, ⟨I(hkl)⟩ is the weighted average intensity for all observations i of reflection hkl, and N is the number of observations of reflection hkl. [d] CC 1/2 is the correlation coefficient between intensities taken from random halves of the dataset. [e] The data set was split into “working” and “free” sets consisting of 95 and 5 % of the data, respectively. The free set was not used for refinement. [f] The R factors R work and R free are calculated as follows: R=∑(|F obsF calc|)/∑|F obs|, where F obs and F calc are the observed and calculated structure factor amplitudes, respectively. [g] As calculated by using MolProbity.19