Table 1.
Data collection | ||
beamline | I02, Diamond Light Source, UK | |
wavelength [Å] | 0.9795 | |
detector | Pilatus 6M | |
resolution range[a] [Å] | 55.30–1.55 (1.59–1.55) | |
space group | P212121 | |
cell parameters [Å] | a=58.83, b=61.02, c=162.03 | |
total no. of measured intensities[a] | 761 897 (28 422) | |
unique reflections[a] | 85 013 (6006) | |
multiplicity[a] | 9.0 (4.7) | |
mean I/σ(I)[a] | 17.0 (1.5) | |
completeness[a] [%] | 99.5 (96.5) | |
R merge [a,b] | 0.076 (1.120) | |
R meas [a,c] | 0.090 (1.255) | |
CC
|
0.997 (0.614) | |
Wilson B value [Å2] | 28.8 | |
Refinement | ||
resolution range[a] [Å] | 55.30–1.55 (1.59–1.55) | |
reflections: working/free[e] | 80 707/4304 | |
R work/R free [a,f] | 0.169/0.190 (0.382/0.379) | |
Ramachandran: favoured/allowed/disallowed[g] [%] | 98.3/1.7/0.0 | |
RMSD of bond distance [Å] | 0.010 | |
RMSD of bond angle [°] | 1.50 | |
no. of protein residues (ranges): chains A/B | 282 (7–103; 115–299)/283 (7–107; 118–299) | |
no. of water molecules/NADP+ molecules | 397/2 | |
mean B factors: protein/water/NADP+/overall [Å2] | 38.2/44.6/27.4/38.6 | |
PDB ID | 5O98 |
[a] Figures in parentheses indicate values for the outer resolution shell. [b] R merge=∑hkl∑i|Ii(hkl)−⟨I(hkl)⟩|/∑hkl∑i Ii(hkl). [c] R meas=∑hkl [N/(N−1)]1/2×∑i|Ii(hkl)−⟨I(hkl)⟩|/∑hkl∑i Ii(hkl), where Ii(hkl) is the ith observation of reflection hkl, ⟨I(hkl)⟩ is the weighted average intensity for all observations i of reflection hkl, and N is the number of observations of reflection hkl. [d] CC is the correlation coefficient between intensities taken from random halves of the dataset. [e] The data set was split into “working” and “free” sets consisting of 95 and 5 % of the data, respectively. The free set was not used for refinement. [f] The R factors R work and R free are calculated as follows: R=∑(|F obs−F calc|)/∑|F obs|, where F obs and F calc are the observed and calculated structure factor amplitudes, respectively. [g] As calculated by using MolProbity.19