Table 1.
Samples | Raw Reads | Clean Reads | Mapped Reads | Q20 (%) | GC content (%) |
---|---|---|---|---|---|
T1_rep1 | 38,249,468 | 37,405,176 | 26,445,784 (70.7%) | 97.09 | 47.16 |
T1_rep2 | 37,637,288 | 36,841,980 | 25,785,714 (69.99%) | 97.18 | 46.95 |
T2_rep1 | 46,148,652 | 44,139,498 | 31,987,790 (72.47%) | 97.16 | 46.89 |
T2_rep2 | 36,774,908 | 35,150,068 | 25,248,424 (71.83%) | 97.51 | 46.99 |
T3_rep1 | 42,471,554 | 40,785,670 | 29,900,697 (73.31%) | 97.53 | 47.43 |
T3_rep2 | 34,886,520 | 33,339,474 | 24,275,046 (72.81%) | 97.61 | 47.05 |
Q20% is the proportion of the nucleotide quality value larger than 20; GC content is proportion of guanidine and cytosine nucleotides among the total nucleotides