Table 1.
Calibrators | RNA category, % | ||||||||||||
Biofluid | Total | Set 1 | Set 2 | Sample | miRNA | rRNA | tRNA | scRNA | Other cRNA | mRNA | non-hg19 | Technical | |
Serum, n = 96 | Average | 4,568,021 | 12,090 | 18,909 | 2,984,332 | 53.4 | 8.5 | 6.6 | 9.7 | 1.6 | 5.2 | 14.8 | 1,552,689 |
Median | 2,190,478 | 6,384 | 10,202 | 1,473,132 | 54.5 | 7.8 | 5.6 | 7.9 | 1.6 | 4.6 | 12.3 | 602,986 | |
Min | 91,780 | 214 | 723 | 51,795 | 17.7 | 1.0 | 0.3 | 2.1 | 0.7 | 0.8 | 2.5 | 25,798 | |
Max | 31,993,329 | 124,488 | 193,438 | 23,141,839 | 81.6 | 19.8 | 20.2 | 39.1 | 2.4 | 21.8 | 62.2 | 12,056,077 | |
Plasma, n = 216 | Average | 3,242,576 | 7,784 | 11,448 | 2,255,037 | 77.8 | 2.8 | 0.6 | 3.1 | 1.2 | 4.7 | 9.8 | 968,308 |
Median | 2,041,473 | 5,883 | 8,524 | 1,411,639 | 80.9 | 2.5 | 0.4 | 2.5 | 0.9 | 3.7 | 7.0 | 429,009 | |
Min | 21,955 | 47 | 143 | 13,300 | 26.6 | 0.7 | 0.2 | 0.2 | 0.3 | 0.8 | 1.1 | 2,011 | |
Max | 19,671,378 | 56,088 | 81,127 | 15,970,087 | 94.4 | 9.2 | 6.5 | 17.5 | 6.6 | 29.5 | 58.7 | 15,767,594 |
Listed are median, minimal (min), and maximal (max) mapped reads on a per-sample basis for plasma and serum. The technical read category includes reads mapped against plasmid and genome sequences of the expression system used in production of RNA ligase 1 and 2, which are used for the 5′- and 3′-adapter ligations in cDNA library preparation, as well as marker sequences and reaction side products. Individual sample read reports are detailed in Dataset S1.