| 1. Non-destructive DNA extraction of single individuals |
Can non-destructive DNA extraction be used to obtain DNA from macroinvertebrates? |
Yes, but not from taxa with little sclerotization, such as the Oligochaeta and Hirudinea. |
| What is a suitable incubation time for immersion in extraction buffer that does not destroy morphological traits but yields DNA? |
An hour works best for most taxa, but for Amphipoda less time would be needed to avoid damage to taxonomic characters. |
| Can DNA be extracted from a specimen used for non-destructive DNA extraction? |
Yes, for most taxa this is possible. It can be difficult for small taxa like Acarina and some Diptera |
| 2. Comparison of bulk non-destructive extraction to tissue-based DNA extraction for metabarcoding samples of known composition—multiple individuals |
How does bulk non-destructive (ND) extraction compares to total homogenization (H) and tissue dissection (D) based extractions when detecting taxa with metabarcoding? |
Detection of taxa was similar across all three extraction methods with >84% of taxa detected. However, some more sclerotized taxa (Coleoptera) were often missed by the ND method compared to other methods. |
| Can specimens from bulk ND extractions be used for DNA barcoding and taxonomic identification? |
Yes, unlike individual ND extraction, specimens subject to bulk ND were largely unaltered and were easily used for DNA barcoding and taxonomic identification |
| 3. Non-destructive DNA extraction of rapid bioassessment samples stored for morphological identification—multiple individuals |
Can taxa be detected in field samples when ND extraction is used? |
Yes, most taxa were detected using ND extraction protocol except Hydrobiidae snail and some small taxa. |
| Do storage conditions (100% ethanol with refrigeration) and sub-optimally (70% ethanol at room temperature) affect taxa detection success when using non-destructive DNA extraction? |
There were no obvious difference in the number of taxa detected between samples stored under different conditions. |