Table 2. Results of experiment 1a examining the effect of incubation time in the T1 buffer with proteinase K (from the Nucleospin DNA extraction kit) on non-destructive total genomic extractions of species from nine invertebrate groups.
The success of non-destructive (ND) extraction (Extraction 1) for standard DNA barcoding PCR is indicated by the ‘ +’ symbol (‘−’ for no PCR product), while the success of the second Chelex extraction (Extraction 2) on the same material is indicated the adjacent column. GenBank accession numbers for sequenced specimens are given in parenthesis.
| Order/ subclass | Species (family) | Sclerotization | Life stage | Incubation time for Extraction 1 | |||||
|---|---|---|---|---|---|---|---|---|---|
| 30 min | 1 hr | 3 hr | |||||||
| Extraction 1 (1st ND) | Extraction 2 (2nd Chelex) | Extraction 1 (1st ND) | Extraction 2 (2nd Chelex) | Extraction 1 (1st ND) | Extraction 2 (2nd Chelex) | ||||
| Oligochaeta | Lumbriculus variegatus (Lumbriculidae) | Soft bodied | Adult | + (MG976202) | – | + | – | ||
| Gastropoda | Physa acuta (Physidae) | Soft bodied/shell | Adult | + (MG976201) | + (MG976114) | + | + | + | – |
| Amphipoda | Austrochiltonia subtenuis (Chiltoniidae) | Light sclerotized | Adult | + (MG976104) | + (MG976105) | + | + | ||
| Diptera | Procladius villosimanus (Chironomidae) | Sclerotized head | Larvae | + (MG976143) | + (MG976144) | + | + | ||
| Trichoptera | Hellyethira simplex (Hydroptilidae) | Sclerotized head and thorax | Larvae | + (MG976170) | + (MG976171) | + (+) | |||
| Ephemeroptera | Offadens sp. (Baetidae) | Sclerotized | Nymph | + (MG976108) | + (MG976109) | + (+) | |||
| Plecoptera | Dinotoperla thwaites (Gripopterygidae) | Sclerotized | Nymph | + (MG976167) | + (MG976167) | + (+) | |||
| Hemiptera | Micronecta sp. (Corixidae) | Sclerotized | Adult | + (MG976178) | + (MG976178) | + (+) | |||
| Coleoptera | Necterosoma sp. (Dytiscidae) | Heavily sclerotized | Adult | – | + | + (MH000193) | +a (MH000194) | + | +a |
Notes.
Extraction 2 using crushed legs failed, but 2 hr incubation of whole animal in Chelex (with proteinase K) was successful.