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. 2018 Jun 13;6:e4980. doi: 10.7717/peerj.4980

Table 2. Results of experiment 1a examining the effect of incubation time in the T1 buffer with proteinase K (from the Nucleospin DNA extraction kit) on non-destructive total genomic extractions of species from nine invertebrate groups.

The success of non-destructive (ND) extraction (Extraction 1) for standard DNA barcoding PCR is indicated by the ‘ +’ symbol (‘−’ for no PCR product), while the success of the second Chelex extraction (Extraction 2) on the same material is indicated the adjacent column. GenBank accession numbers for sequenced specimens are given in parenthesis.

Order/ subclass Species (family) Sclerotization Life stage Incubation time for Extraction 1
30 min 1 hr 3 hr
Extraction 1 (1st ND) Extraction 2 (2nd Chelex) Extraction 1 (1st ND) Extraction 2 (2nd Chelex) Extraction 1 (1st ND) Extraction 2 (2nd Chelex)
Oligochaeta Lumbriculus variegatus (Lumbriculidae) Soft bodied Adult + (MG976202) +
Gastropoda Physa acuta (Physidae) Soft bodied/shell Adult + (MG976201) + (MG976114) + + +
Amphipoda Austrochiltonia subtenuis (Chiltoniidae) Light sclerotized Adult + (MG976104) + (MG976105) + +
Diptera Procladius villosimanus (Chironomidae) Sclerotized head Larvae + (MG976143) + (MG976144) + +
Trichoptera Hellyethira simplex (Hydroptilidae) Sclerotized head and thorax Larvae + (MG976170) + (MG976171) + (+)
Ephemeroptera Offadens sp. (Baetidae) Sclerotized Nymph + (MG976108) + (MG976109) + (+)
Plecoptera Dinotoperla thwaites (Gripopterygidae) Sclerotized Nymph + (MG976167) + (MG976167) + (+)
Hemiptera Micronecta sp. (Corixidae) Sclerotized Adult + (MG976178) + (MG976178) + (+)
Coleoptera Necterosoma sp. (Dytiscidae) Heavily sclerotized Adult + + (MH000193) +a (MH000194) + +a

Notes.

a

Extraction 2 using crushed legs failed, but 2 hr incubation of whole animal in Chelex (with proteinase K) was successful.