Table 2.
The primer sequences of RFLP, sequencing, and PCR conditions for the studied SNPs
SNP | Type of primers |
Primer sequences
5’ 3’ |
Enzyme |
PCR condition (
o
C/s )
|
DNA/ fragment size (bp) | ||
---|---|---|---|---|---|---|---|
Den. | Ann. | Ext. | |||||
rs1801214 | PCR-RFLP | F:TTAGCCACCTGGTCGTCGTCAA | Hind II | 95/30 | 64/30 | 72/30 | 123/106+17 |
R:AGGGCACAAGGTAGCAGTAGGTGC | |||||||
Sequencing | F:GCAACCTCACCATCGACTTC | 95/30 | 59/30 | 72/30 | 600 | ||
R:AGGGCACAAGGTAGCAGTAG | |||||||
rs1046320 | PCR-RFLP | F:CTTTCACCAGTGCCGCCTGTG | Sph I | 95/30 | 60/30 | 72/30 | 96/77+19 |
R:GTATTCCCTTTGTCGGGGTGCA | |||||||
Sequencing | F:GATCGAGTTCAGCACCATCCT | 95/30 | 60/30 | 72/30 | 679 | ||
R:AAAGGGGAAGAGCTGCTAAGG |
Den: denaturation; Ann: annealing; Ext: extension.