Table 3.
Haplotypes of all Aspergillus welwitschiae isolates worldwide (including the sisal Aspergillus welwitschiae of our study).
| Haplotype | Number | Isolate code | Position/variable site | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 14 | 30 | 41 | 62 | 74 | 75 | 92 | 95 | 99 | 108 | 128 | 191 | 200 | 212 | |||
| Transition (C:T) | Transition (C:T) | Transversion (C:G) | Transition (G:A) | Transition (G:A) | Transition (G:A) | Transition (T:C) | Transition (G:A) | Transversion (T:G) | Transition (C:T) | Transition (T:C) | Transversion (C:A) | Transversion (T:C) | Transition (C:T) | |||
| Autoapomorphy (seq. n. 124) | Autoapomorphy (seq. n. 92) | Autoapomorphy (seq. n.124) | Autoapomorphy (seq. n. 91) | Autoapomorphy (seq. n. 111) | ||||||||||||
| Hap 1 | 1 | SCII | C | C | C | G | G | G | T | G | T | C | T | C | T | C |
| 2 | CSDI | C | C | C | G | G | G | T | G | T | C | T | C | T | C | |
| 3 | SRII | C | C | C | G | G | G | T | G | T | C | T | C | T | C | |
| 4 | RCI | C | C | C | G | G | G | T | G | T | C | T | C | T | C | |
| 5 | A_welwitschiae_KR064475.1_EGE-KL-1351 | C | C | C | G | G | G | T | G | T | C | T | C | T | C | |
| 6 | A_welwitschiae_KR064468.1_EGE-KL-1185 | C | C | C | G | G | G | T | G | T | C | T | C | T | C | |
| 7 | A_welwitschiae_KR064466.1_EGE-KL-1171 | C | C | C | G | G | G | T | G | T | C | T | C | T | C | |
| 8 | A_welwitschiae_FR751414.1_CCF < CZE_ 4068 | C | C | C | G | G | G | T | G | T | C | T | C | T | C | |
| 9 | A_welwitschiae_LK031763.1_TUAa4 | C | C | C | G | G | G | T | G | T | C | T | C | T | C | |
| 10 | A_welwitschiae_LK031761.1_TUAa36 | C | C | C | G | G | G | T | G | T | C | T | C | T | C | |
| 11 | A_welwitschiae_LK031760.1_TUAa35 | C | C | C | G | G | G | T | G | T | C | T | C | T | C | |
| 12 | A_welwitschiae_LK031758.1_TUAa33 | C | C | C | G | G | G | T | G | T | C | T | C | T | C | |
| 13 | A_welwitschiae_LK031757.1_TUAa32 | C | C | C | G | G | G | T | G | T | C | T | C | T | C | |
| 14 | A_welwitschiae_LK031752.1_TUAa28 | C | C | C | G | G | G | T | G | T | C | T | C | T | C | |
| 15 | A_welwitschiae_LK031750.1_TUAa26 | C | C | C | G | G | G | T | G | T | C | T | C | T | C | |
| 16 | A_welwitschiae_LK031749.1_TUAa25 | C | C | C | G | G | G | T | G | T | C | T | C | T | C | |
| 17 | A_welwitschiae_LK031744.1_TUAa20 | C | C | C | G | G | G | T | G | T | C | T | C | T | C | |
| 18 | A_welwitschiae_LK031743.1_TUAa2 | C | C | C | G | G | G | T | G | T | C | T | C | T | C | |
| 19 | A_welwitschiae_LK031739.1_TUAa16 | C | C | C | G | G | G | T | G | T | C | T | C | T | C | |
| 20 | A_welwitschiae_LK031736.1_TUAa13 | C | C | C | G | G | G | T | G | T | C | T | C | T | C | |
| 21 | A_welwitschiae_KJ775286.1_DTO_180A9 | C | C | C | G | G | G | T | G | T | C | T | C | T | C | |
| 22 | A_welwitschiae_KU681064.1_DTO265-G2 | C | C | C | G | G | G | T | G | T | C | T | C | T | C | |
| 23 | A_welwitschiae_KX894585.1_KAS | C | C | C | G | G | G | T | G | T | C | T | C | T | C | |
| 24 | A_welwitschiae_KX894584.1_KAS | C | C | C | G | G | G | T | G | T | C | T | C | T | C | |
| 25 | A_welwitschiae_KJ775332.1_DTO_247F7 | C | C | C | G | G | G | T | G | T | C | T | C | T | C | |
| 26 | A_welwitschiae_LT558746.1_CCF_4963 | C | C | C | G | G | G | T | G | T | C | T | C | T | C | |
| 27 | A_welwitschiae_KR064473.1_EGE-KL-1318 | C | C | C | G | G | G | T | G | T | C | T | C | T | C | |
| 28 | A_welwitschiae_KX894578.1_KAS_5970 | C | C | C | G | G | G | T | G | T | C | T | C | T | C | |
| 29 | A_welwitschiae_KC480196.1_CBS_139.54_TYPE | C | C | C | G | G | G | T | G | T | C | T | C | T | C | |
| 30 | A_welwitschiae_KR064484.1_EGE-KL-T-37 | C | C | C | G | G | G | T | G | T | C | T | C | T | C | |
| 31 | A_welwitschiae_KR064457.1_EGE-KL-1083 | C | C | C | G | G | G | T | G | T | C | T | C | T | C | |
| 32 | A_welwitschiae_KR064467.1_EGE-KL-1176 | C | C | C | G | G | G | T | G | T | C | T | C | T | C | |
| 33 | A_welwitschiae_KR064483.1_EGE-KL-T-36 | C | C | C | G | G | G | T | G | T | C | T | C | T | C | |
| 34 | A_welwitschiae_KX769858.1_LYL7 | C | C | C | G | G | G | T | G | T | C | T | C | T | C | |
| 35 | A_welwitschiae_KR064479.1_EGE-KL-1399 | C | C | C | G | G | G | T | G | T | C | T | C | T | C | |
| 36 | A_welwitschiae_KR064481.1_EGE-KL-1451 | C | C | C | G | G | G | T | G | T | C | T | C | T | C | |
| 37 | A_welwitschiae_LC000569.1_PW3171 | C | C | C | G | G | G | T | G | T | C | T | C | T | C | |
| 38 | A_welwitschiae_KR064462.1_EGE-KL-1116 | C | C | C | G | G | G | T | G | T | C | T | C | T | C | |
| 39 | A_welwitschiae_KR064476.1_EGE-KL-1356 | C | C | C | G | G | G | T | G | T | C | T | C | T | C | |
| 40 | A_welwitschiae_KR064459.1_EGE-KL-1102 | C | C | C | G | G | G | T | G | T | C | T | C | T | C | |
| 41 | A_welwitschiae_KR064469.1_EGE-KL-1198 | C | C | C | G | G | G | T | G | T | C | T | C | T | C | |
| 42 | A_welwitschiae_KR064460.1_EGE-KL-1108 | C | C | C | G | G | G | T | G | T | C | T | C | T | C | |
| 43 | A_welwitschiae_KR064477.1_EGE-KL-1373 | C | C | C | G | G | G | T | G | T | C | T | C | T | C | |
| 44 | A_welwitschiae_KR064471.1_EGE-KL-1296 | C | C | C | G | G | G | T | G | T | C | T | C | T | C | |
| 45 | A_welwitschiae_KR064458.1_EGE-KL-1094 | C | C | C | G | G | G | T | G | T | C | T | C | T | C | |
| 46 | A_welwitschiae_KR064480.1_EGE-KL-1410 | C | C | C | G | G | G | T | G | T | C | T | C | T | C | |
| 47 | A_welwitschiae_KR064472.1_EGE-KL-1308 | C | C | C | G | G | G | T | G | T | C | T | C | T | C | |
| 48 | A_welwitschiae_KT749950.1_ITAL_25.132 | C | C | C | G | G | G | T | G | T | C | T | C | T | C | |
| 49 | A_welwitschiae_KR064463.1_EGE-KL-1146 | C | C | C | G | G | G | T | G | T | C | T | C | T | C | |
| Hap 2 | 50 | SRI | C | T | C | G | G | G | T | G | T | C | T | C | T | C |
| 51 | A_welwitschiae_KR020702.1_ANRC_519 | C | T | C | G | G | G | T | G | T | C | T | C | T | C | |
| 52 | A_welwitschiae_LK031768.1_TUAa9 | C | T | C | G | G | G | T | G | T | C | T | C | T | C | |
| 53 | A_welwitschiae_LK031767.1_TUAa8 | C | T | C | G | G | G | T | G | T | C | T | C | T | C | |
| 54 | A_welwitschiae_LK031762.1_TUAa37 | C | T | C | G | G | G | T | G | T | C | T | C | T | C | |
| 55 | A_welwitschiae_LK031759.1_TUAa34 | C | T | C | G | G | G | T | G | T | C | T | C | T | C | |
| 56 | A_welwitschiae_LK031756.1_TUAa31 | C | T | C | G | G | G | T | G | T | C | T | C | T | C | |
| 57 | A_welwitschiae_LK031754.1_TUAa3 | C | T | C | G | G | G | T | G | T | C | T | C | T | C | |
| 58 | A_welwitschiae_LK031753.1_TUAa29 | C | T | C | G | G | G | T | G | T | C | T | C | T | C | |
| 59 | A_welwitschiae_LK031751.1_TUAa27 | C | T | C | G | G | G | T | G | T | C | T | C | T | C | |
| 60 | A_welwitschiae_LK031748.1_TUAa24 | C | T | C | G | G | G | T | G | T | C | T | C | T | C | |
| 61 | A_welwitschiae_LK031747.1_TUAa23 | C | T | C | G | G | G | T | G | T | C | T | C | T | C | |
| 62 | A_welwitschiae_LK031746.1_TUAa22 | C | T | C | G | G | G | T | G | T | C | T | C | T | C | |
| 63 | A_welwitschiae_LK031745.1_TUAa21 | C | T | C | G | G | G | T | G | T | C | T | C | T | C | |
| 64 | A_welwitschiae_LK031742.1_TUAa19 | C | T | C | G | G | G | T | G | T | C | T | C | T | C | |
| 65 | A_welwitschiae_LK031741.1_TUAa18 | C | T | C | G | G | G | T | G | T | C | T | C | T | C | |
| 66 | A_welwitschiae_LK031740.1_TUAa17 | C | T | C | G | G | G | T | G | T | C | T | C | T | C | |
| 67 | A_welwitschiae_LK031738.1_TUAa15 | C | T | C | G | G | G | T | G | T | C | T | C | T | C | |
| 68 | A_welwitschiae_LK031737.1_TUAa14 | C | T | C | G | G | G | T | G | T | C | T | C | T | C | |
| 69 | A_welwitschiae_LK031735.1_TUAa12 | C | T | C | G | G | G | T | G | T | C | T | C | T | C | |
| 70 | A_welwitschiae_LK031734.1_TUAa11 | C | T | C | G | G | G | T | G | T | C | T | C | T | C | |
| 71 | A_welwitschiae_LK031733.1_TUAa10 | C | T | C | G | G | G | T | G | T | C | T | C | T | C | |
| 72 | A_welwitschiae_KR020701.1_ANRC_521 | C | T | C | G | G | G | T | G | T | C | T | C | T | C | |
| 73 | A_welwitschiae_KJ775268.1_DTO_178C2 | C | T | C | G | G | G | T | G | T | C | T | C | T | C | |
| 74 | A_welwitschiae_FR751417.1_CCF < CZE_ 641 | C | T | C | G | G | G | T | G | T | C | T | C | T | C | |
| 75 | A_welwitschiae_LN890507.1_FCBP087 | C | T | C | G | G | G | T | G | T | C | T | C | T | C | |
| 76 | A_welwitschiae_LT558747.1_S776 | C | T | C | G | G | G | T | G | T | C | T | C | T | C | |
| 77 | A_welwitschiae_KR064482.1_EGE-KL-CD-202 | C | T | C | G | G | G | T | G | T | C | T | C | T | C | |
| 78 | A_welwitschiae_KR064464.1_EGE-KL-1150 | C | T | C | G | G | G | T | G | T | C | T | C | T | C | |
| 79 | A_welwitschiae_KR064478.1_EGE-KL-1398 | C | T | C | G | G | G | T | G | T | C | T | C | T | C | |
| 80 | A_welwitschiae_LC000559.1_PW3050 | C | T | C | G | G | G | T | G | T | C | T | C | T | C | |
| 81 | A_welwitschiae_LC000561.1_PW3162 | C | T | C | G | G | G | T | G | T | C | T | C | T | C | |
| 82 | A_welwitschiae_KR064474.1_EGE-KL-1350 | C | T | C | G | G | G | T | G | T | C | T | C | T | C | |
| 83 | A_welwitschiae_KR064470.1_EGE-KL-1227 | C | T | C | G | G | G | T | G | T | C | T | C | T | C | |
| 84 | A_welwitschiae_KR064465.1_EGE-KL-1154 | C | T | C | G | G | G | T | G | T | C | T | C | T | C | |
| 85 | A_welwitschiae_KT749951.1_ITAL_684 | C | T | C | G | G | G | T | G | T | C | T | C | T | C | |
| 86 | A_welwitschiae_KT749956.1_ITAL_15.931 | C | T | C | G | G | G | T | G | T | C | T | C | T | C | |
| Hap 3 | 87 | A_welwitschiae_LK031766.1_TUAa7 | C | T | C | G | G | G | T | G | T | C | C | C | T | C |
| 88 | A_welwitschiae_LK031765.1_TUAa6 | C | T | C | G | G | G | T | G | T | C | C | C | T | C | |
| 89 | A_welwitschiae_LK031764.1_TUAa5 | C | T | C | G | G | G | T | G | T | C | C | C | T | C | |
| 90 | A_welwitschiae_KT749955.1_ITAL_361 | C | T | C | G | G | G | T | G | T | C | C | C | T | C | |
| Hap 4 | 91 | A_welwitschiae_FR751443.1_CCF < CZE_ 4067 | C | C | C | G | G | G | T | A | T | C | T | C | T | C |
| Hap 5 | 92 | A_welwitschiae_KR064461.1_EGE-KL-1112 | C | T | G | G | G | G | T | G | T | C | T | C | T | T |
| Hap 6 | 93 | SCI | C | T | C | G | A | A | C | G | G | C | T | C | T | C |
| 94 | CCII | C | T | C | G | A | A | C | G | G | C | T | C | T | C | |
| 95 | FRII | C | T | C | G | A | A | C | G | G | C | T | C | T | C | |
| 96 | RCII | C | T | C | G | A | A | C | G | G | C | T | C | T | C | |
| 97 | CCI | C | T | C | G | A | A | C | G | G | C | T | C | T | C | |
| 98 | FCI | C | T | C | G | A | A | C | G | G | C | T | C | T | C | |
| 99 | CRI | C | T | C | G | A | A | C | G | G | C | T | C | T | C | |
| 100 | FRI | C | T | C | G | A | A | C | G | G | C | T | C | T | C | |
| 101 | SSDI | C | T | C | G | A | A | C | G | G | C | T | C | T | C | |
| 102 | CSDII | C | T | C | G | A | A | C | G | G | C | T | C | T | C | |
| 103 | FCII | C | T | C | G | A | A | C | G | G | C | T | C | T | C | |
| 104 | FSDII | C | T | C | G | A | A | C | G | G | C | T | C | T | C | |
| 105 | RRI | C | T | C | G | A | A | C | G | G | C | T | C | T | C | |
| 106 | RSDI | C | T | C | G | A | A | C | G | G | C | T | C | T | C | |
| 107 | SSDII | C | T | C | G | A | A | C | G | G | C | T | C | T | C | |
| 108 | RSDII | C | T | C | G | A | A | C | G | G | C | T | C | T | C | |
| 109 | RRII | C | T | C | G | A | A | C | G | G | C | T | C | T | C | |
| 110 | CRII | C | T | C | G | A | A | C | G | G | C | T | C | T | C | |
| 111 | FSDI | C | T | C | G | A | A | C | G | G | C | T | C | T | C | |
| 112 | A_welwitschiae_KU207999.1_131 | C | T | C | G | A | A | C | G | G | C | T | C | T | C | |
| Hap 7 | 113 | A_welwitschiae_KU554596.1_AN32 | C | T | C | G | G | G | C | G | G | C | T | C | T | C |
| 114 | A_welwitschiae_KU554595.1_AN12 | C | T | C | G | G | G | C | G | G | C | T | C | T | C | |
| 115 | A_welwitschiae_KU554594.1_AN7 | C | T | C | G | G | G | C | G | G | C | T | C | T | C | |
| 116 | A_welwitschiae_KP330148.1_DTO 266-G5 | C | T | C | G | G | G | C | G | G | C | T | C | T | C | |
| 117 | A_welwitschiae_KP330147.1_DTO 266-E3 | C | T | C | G | G | G | C | G | G | C | T | C | T | C | |
| 118 | A_welwitschiae_KJ775363.1_DTO_267G1 | C | T | C | G | G | G | C | G | G | C | T | C | T | C | |
| 119 | A_welwitschiae_KJ775336.1_DTO_266D4 | C | T | C | G | G | G | C | G | G | C | T | C | T | C | |
| 120 | A_welwitschiae_KJ775333.1_DTO_247G5 | C | T | C | G | G | G | C | G | G | C | T | C | T | C | |
| 121 | A_welwitschiae_LK031755.1_TUAa30 | C | T | C | G | G | G | C | G | G | C | T | C | T | C | |
| 122 | A_welwitschiae_KT749952.1_ITAL_47.514 | C | T | C | G | G | G | C | G | G | C | T | C | T | C | |
| Hap 8 | 123 | A_welwitschiae_LK031732.1_TUAa1 | C | T | C | G | G | G | C | G | G | C | T | C | C | C |
| Hap 9 | 124 | A_welwitschiae_KT749953.1_ITAL_48.544 | T | T | C | A | G | G | C | G | G | C | T | C | T | C |
| Hap 10 | 125 | A_welwitschiae_KP330149.1_DTO 267-I3 | C | T | C | G | G | G | C | G | G | T | T | A | T | C |
| 126 | A_welwitschiae_KT749954.1_ITAL_987 | C | T | C | G | G | G | C | G | G | T | T | A | T | C | |