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. 2016 Jan 25;7(5):3092–3101. doi: 10.1039/c5sc04832j

Table 1. Kinetic parameters of the various supramolecular nucleoapzyme structures with respect to the oxidation of dopamine (1) to aminochrome (2) in the presence of H2O2 a .

Entry Code k cat b (10–3 s–1) K M (μM) V max (μM min–1) k cat/k2 c
1 0 7.3 ± 0.4 1.1 ± 0.2 0.32 ± 0.02 8.1
2 3t 9.4 ± 0.5 1.7 ± 0.3 0.42 ± 0.02 10.4
3 4t 27.0 ± 1.0 6.7 ± 0.7 1.20 ± 0.04 30.0
4 5t 16.5 ± 0.7 3.7 ± 0.5 0.73 ± 0.03 18.3
5 6t 17.0 ± 0.8 5.0 ± 0.7 0.76 ± 0.04 18.9
6 7t 12.8 ± 0.3 3.5 ± 0.3 0.57 ± 0.01 14.2
7 8t 12.3 ± 0.3 7.0 ± 0.5 0.55 ± 0.01 13.6
8 9t 5.2 ± 0.4 4.0 ± 1.0 0.23 ± 0.02 5.8
9 4r 6.1 ± 0.5 c.n.b.d. d 0.27 ± 0.02 6.7
10 5r 5.9 ± 0.7 c.n.b.d. d 0.26 ± 0.03 6.5
11 6r 7.2 ± 0.4 c.n.b.d. d 0.32 ± 0.02 7.9
12 ss9 4.4 ± 0.2 c.n.b.d. d 0.19 ± 0.01 4.9

aConditions: 0.5–64 μM dopamine, 100 μM H2O2; 0.74 μM active catalyst; buffer: 50 mM MES, pH = 5.5, 200 mM KCl, 2 mM MgCl2.

b k cat = Vmax/[catalyst] = Vmax/0.74.

cThe rate constant for the hGQ DNAzyme (1) is: k2 = (0.9 ± 0.1) × 10–3 s–1.

dc.n.b.d. stands for ‘could not be determined’.