Table 1. Kinetic parameters of the various supramolecular nucleoapzyme structures with respect to the oxidation of dopamine (1) to aminochrome (2) in the presence of H2O2 a .
Entry | Code | k cat b (10–3 s–1) | K M (μM) | V max (μM min–1) | k cat/k2 c |
1 | 0 | 7.3 ± 0.4 | 1.1 ± 0.2 | 0.32 ± 0.02 | 8.1 |
2 | 3t | 9.4 ± 0.5 | 1.7 ± 0.3 | 0.42 ± 0.02 | 10.4 |
3 | 4t | 27.0 ± 1.0 | 6.7 ± 0.7 | 1.20 ± 0.04 | 30.0 |
4 | 5t | 16.5 ± 0.7 | 3.7 ± 0.5 | 0.73 ± 0.03 | 18.3 |
5 | 6t | 17.0 ± 0.8 | 5.0 ± 0.7 | 0.76 ± 0.04 | 18.9 |
6 | 7t | 12.8 ± 0.3 | 3.5 ± 0.3 | 0.57 ± 0.01 | 14.2 |
7 | 8t | 12.3 ± 0.3 | 7.0 ± 0.5 | 0.55 ± 0.01 | 13.6 |
8 | 9t | 5.2 ± 0.4 | 4.0 ± 1.0 | 0.23 ± 0.02 | 5.8 |
9 | 4r | 6.1 ± 0.5 | c.n.b.d. d | 0.27 ± 0.02 | 6.7 |
10 | 5r | 5.9 ± 0.7 | c.n.b.d. d | 0.26 ± 0.03 | 6.5 |
11 | 6r | 7.2 ± 0.4 | c.n.b.d. d | 0.32 ± 0.02 | 7.9 |
12 | ss9 | 4.4 ± 0.2 | c.n.b.d. d | 0.19 ± 0.01 | 4.9 |
aConditions: 0.5–64 μM dopamine, 100 μM H2O2; 0.74 μM active catalyst; buffer: 50 mM MES, pH = 5.5, 200 mM KCl, 2 mM MgCl2.
b k cat = Vmax/[catalyst] = Vmax/0.74.
cThe rate constant for the hGQ DNAzyme (1) is: k2 = (0.9 ± 0.1) × 10–3 s–1.
dc.n.b.d. stands for ‘could not be determined’.