Table 1. Sequences used for phylogenetic and genetic divergence analyses.
| ID | Leishmania Strain ID | Accession Number | Leishmania International code | Parasite species | Geographic Origin | Sequence length1 | Nucleotide position (sequence length analyzed)2 | Ref |
|---|---|---|---|---|---|---|---|---|
| 1 | 3562* | MG202146 | MHOM/BR/2014/308 | L. braziliensis | Porto Velho/RO/Brazil | 790 | 47–834 (788) | This study |
| 2 | 386 | MG202144 | MHOM/BR/2015/386 | L. braziliensis | Porto Velho/RO/Brazil | 788 | 47–834 (788) | This study |
| 3 | 3545* | MG202143 | MHOM/BR/2014/275 | L. braziliensis | Porto Velho/RO/Brazil | 788 | 47–834 (788) | This study |
| 4 | 3569* | MG202145 | MHOM/BR/2014/299 | L. braziliensis | Porto Velho/RO/Brazil | 788 | 47–834 (788) | This study |
| 5 | 3567* | MG202139 | MHOM/BR/2014/291 | L. braziliensis | Candeias/RO/Brazil | 788 | 47–834 (788) | This study |
| 6 | 3538* | MG202140 | MHOM/BR/2014/271 | L. guyanensis | Candeias/RO/Brazil | 788 | 47–834 (788) | This study |
| 7 | 3354* | MG202141 | MHOM/BR/2011/S77-ABF | L. guyanensis | Santarem/PA/Brazil | 787 | 47–834 (788) | This study |
| 8 | 1545* | MG202142 | MCEB/BR/1984/M8408 | L. shawi | Paraupebas/PA/Brazil | 788 | 47–834 (788) | This study |
| 9 | 3460* | MG202147 | MHOM/BR/2013/04LTAVMR | L. guyanensis | Manaus/AM/Brazil | 788 | 47–834 (788) | This study |
| 10 | 3461* | MG202148 | MHOM/BR/2013/05LTAMVL | L. guyanensis | Manaus/AM/Brazil | 788 | 47–834 (788) | This study |
| 11 | 3486* | MG202149 | MHOM/BR/2013/27JNS | L. guyanensis | Manaus/AM/Brazil | 788 | 47–834 (788) | This study |
| 12 | 3542* | MG202151 | MHOM/BR/2014/233CFS | L. guyanensis | Manaus/AM/Brazil | 737 | 47–834 (788) | This study |
| 13 | 3503* | MG202150 | MHOM/BR/2013/33LGS | L. guyanensis | Manaus/AM/Brazil | 788 | 47–834 (788) | This study |
| 14 | 1398* | JX313127 | MHOM/BR/1989/IM3597 | L. guyanensis | Manaus/AM/Brazil | 3228 | 370–3616 (3247) | [19] |
| 15 | 2001 | KY750607 | MHOM/FG/2011/2001 | L. guyanensis | Manaus/AM/Brazil** | 5196 | 62–5278 (5217) | [23] |
| 16 | M4147 | KX808487 | MHOM/BR/1975/M4147 | L. guyanensis | Monte Dourado/PA/Brazil | 5283 | 1–5307 (5307) | [5] |
| 17 | M4147 | U01899 | MHOM/BR/1975/M4147 | L. guyanensis | Monte Dourado/PA/Brazil | 5283 | 371–834 (464) | [28] |
| 18 | M5313 | JX313126 | IWHI/BR/1978/M5313 | L. guyanensis | Monte Dourado/PA/Brazil | 2480 | 371–834 (464) | [19] |
| 19 | LF94 | KY750608 | MHOM/FG/2013/LF94 | L. guyanensis | French Guiana | 5192 | 62–5278 (5217) | [23] |
| 20 | XJ93_2 | KY750609 | MHOM/FG/2013XJ93 | L. guyanensis | French Guiana | 5195 | 62–5278 (5217) | [23] |
| 21 | YA70 | KY750610 | MHOM/FG/2013YA70 | L. braziliensis | French Guiana | 5188 | 62–5278 (5217) | [23] |
| 22 | 2014 | KY750611 | MHOM/FG/2013/2014 | L. guyanensis | French Guiana | 5193 | 62–5278 (5217) | [23] |
| 23 | 2008 | KY750612 | MHOM/FG/2012/2008 | L. guyanensis | French Guiana | 5194 | 62–5278 (5217) | [23] |
| 24 | 2015 | KY750613 | MHOM/FG/2012/2015 | L. guyanensis | French Guiana | 5194 | 62–5278 (5217) | [23] |
| 25 | 2028_1 | KY750614 | MHOM/FG/20122028 | L. guyanensis | French Guiana | 5194 | 62–5278 (5217) | [23] |
| 26 | 2028_2 | KY750615 | MHOM/FG/2012/2028 | L. guyanensis | French Guiana | 5194 | 62–5278 (5217) | [23] |
| 27 | 2028_3 | KY750616 | MHOM/FG/2012/2028 | L. guyanensis | French Guiana | 5194 | 62–5278 (5217) | [23] |
| 28 | LF98 | KY750617 | MHOM/FG/2013/LF98 | L. guyanensis | French Guiana | 5194 | 62–5278 (5217) | [23] |
| 29 | LL28 | KY750618 | MHOM/FG/2012/LL28 | L. guyanensis | French Guiana | 5194 | 62–5278 (5217) | [23] |
| 30 | MC71 | KY750619 | MHOM/FG/2012/MC71 | L. guyanensis | French Guiana | 5194 | 62–5278 (5217) | [23] |
| 31 | MJ25 | KY750620 | MHOM/FG/2012/MJ25 | L. guyanensis | French Guiana | 5194 | 62–5278 (5217) | [23] |
| 32 | PD46 | KY750621 | MHOM/FG/2014/PD46 | L. guyanensis | French Guiana | 5194 | 62–5278 (5217) | [23] |
| 33 | VL91 | KY750622 | MHOM/FG/2012/VL19 | L. guyanensis | French Guiana | 5194 | 62–5278 (5217) | [23] |
| 34 | VW21 | KY750623 | MHOM/FG/2013/VW21 | L. guyanensis | French Guiana | 5194 | 62–5278 (5217) | [23] |
| 35 | WF69G1 | KY750624 | MHOM/FG/2012/WF69 | L. guyanensis | French Guiana | 5194 | 62–5278 (5217) | [23] |
| 36 | WF69G2 | KY750625 | MHOM/FG/2012/WF69 | L. guyanensis | French Guiana | 5194 | 62–5278 (5217) | [23] |
| 37 | XJ93G1 | KY750626 | MHOM/FG2013/XJ93 | L. guyanensis | French Guiana | 5194 | 62–5278 (5217) | [23] |
| 38 | XK73 | KY750627 | MHOM/FG/2013/XK73 | L. guyanensis | French Guiana | 5194 | 62–5278 (5217) | [23] |
| 39 | YE48 | KY750628 | MHOM/FG/2013/YE48 | L. guyanensis | French Guiana | 5194 | 62–5278 (5217) | [23] |
| 40 | YR07 | KY750629 | MHOM/FG/2014/YR07 | L. guyanensis | French Guiana | 5194 | 62–5278 (5217) | [23] |
| 41 | YZ58 | KY750630 | MHOM/FG/2012/YZ58 | L. guyanensis | French Guiana | 5194 | 62–5278 (5217) | [23] |
| 42 | LEM2700 | KX808483 | MHOM/BO/1990/AN | L. braziliensis | Bolivia | 5283 | 3–5308 (5306) | [5] |
| 43 | LEM3874 | KX808486 | MHOM/BO/IMT252 | L. braziliensis | Bolivia | 5286 | 3–5311 (5309) | [5] |
| 44 | LEM2780(b) | KX808485 | MHOM/BO/1990/CS | L. braziliensis | Bolivia | 5274 | 18–5299 (5281) | [5] |
| 45 | LEM2780(a) | KX808484 | MHOM/BO/1990/CS | L. braziliensis | Bolivia | 5259 | 1–5297 (5297) | [5] |
| 46 | Lb2169 | KC862308 | MHOM/BO/2011/2169 | L. braziliensis | Bolivia | 4969 | 371–834 (464) | [27] |
| 47 | CUMC1 | M92355 | MHOM/SR/1980/CUMC1 | L. guyanensis | Suriname | 5284 | 2–5313 (5312) | [27] |
*IOC/L code related to strains deposited in the Leishmania Collection from the Oswaldo Cruz Foundation
** isolated in French Guiana, but the geographic location of infection was reported as in the region of Manaus, Amazonas state (AM), Brazil [23]
1Total length of the sequence available in the Genbank or obtained in this study
2Nucleotide position and sequence length defined after sequences alignment.
MHOM = Mammalia, Homo sapiens; MCEB = Mammalia, Cebus apella; IWHI = Insecta, Lutzomyia whitmani; L. guyanensis = Leishmania (Viannia) guyanensis; L. braziliensis = Leishmania (Viannia) braziliensis; L. shawi = Leishmania (Viannia) shawi. AM, PA and RO are Amazonas, Pará and Rondônia states, respectively.