Table 1.

Summary of single nucleotide polymorphisms (SNPs) of Pto-MIR167a, lncRNA gene ARFRL, and Pto-ARF8.

Gene	Region	Length (bp)	Number of polymorphic sites	Number of common SNPs	Percentage polymorphisms (%)	Nucleotide diversity
						π	θw
Pto-MIR167a
	Flanking region	2000	95	91	4.75	0.01832	0.01098
	Pre-mature region	89	3	2	3.37	0.01219	0.00779
	Mature region	21	0	0	0	0	0
	Total	2089	98	93	4.69	0.01806	0.01084
Pto-ARFRL
	Promoter	2000	4	4	0.20	0.00122	0.00097
	LncRNA transcribed region	1190	5	5	0.42	0.00052	0.00046
	Flanking	2000	14	14	0.70	0.00189	0.00179
	Total	5190	23	23	0.44	0.00119	0.00106
Pto-ARF8
	Promoter	2000	35	34	1.75	0.00385	0.00404
	5′ UTR	904	9	9	1.00	0.00435	0.00230
	Exon	2490	29	17	1.16	0.00246	0.00269
	Intron	5737	151	90	2.63	0.00656	0.00608
	3′ UTR	460	23	20	5.00	0.01650	0.01156
	Flanking	2000	100	95	5.00	0.01818	0.01156
	Non-synonymous	1911.3	10	7	0.52	0.00235	0.00290
	Synonymous	575.7	19	10	3.30	0.00284	0.00201
	Total silenta	11679.7	337	258	2.89	0.00812	0.00639
	Totalb	13591	347	265	2.55	0.00731	0.00590

^aTotal silent: synonymous sites plus polymorphic sites in noncoding regions of genes.

^bTotal: silent sites plus nonsynonymous sites of genes.