Fig. 2.
Family and sub-family organization of the 931 TnpAY1 protein candidates explored with MCL. a Evolution of the number of classes as a function of IF value. Three classes (family level) are obtained with IF = 1.2 (blue bar) and rise to reach a maximum of 14 classes. Twelve classes (subclass level) were obtained with IF in the range [3.0, 3.6] (red bar). b Graph partitioning obtained with IF = 1.2. Edges are BlastP hits (e-value <1e-5) between proteins (vertices). The vertices are colored according to MCL classes. c Graph partitioning obtained with IF = 3.0. d Histograms of the subclass sizes obtained with IF = 3.0. e Histograms of the subclass sizes obtained after propagation of the annotation to the complete sample of protein candidates. A maximum of 2620 proteins is observed in subclass 1.1. The color code is the same in c, d and e panels