REAGENT or RESOURCE | SOURCE | IDENTIFIER |
---|---|---|
Antibodies | ||
Monoclonal anti-HIV-1 Gp120 2G12 | NIH AIDS Reagent Program | Cat# 1476 |
Monoclonal anti-HIV-1 Gp120 b12 | NIH AIDS Reagent Program | Cat# 2640 |
Monoclonal anti-HIV-1 Gp120 VRC01 | NIH AIDS Reagent Program | Cat# 12033; RRID: AB_2491019 |
Monoclonal anti-HIV-1 Gp120 F105 | NIH AIDS Reagent Program; | Cat# 857 |
Monoclonal anti-HIV-1 Gp120 PGT121 | John R. Mascola, VRC, NIH | N/A |
Monoclonal anti-HIV-1 Gp120 PG9 | John R. Mascola, VRC, NIH | N/A |
Monoclonal anti-HIV-1 Gp120 PG16 | John R. Mascola, VRC, NIH | N/A |
Monoclonal anti-HIV-1 Gp120 PGT145 | John R. Mascola, VRC, NIH | N/A |
Monoclonal anti-HIV-1 Gp120 CH01 | NIH AIDS Reagent Program | Cat# 12561; RRID: AB_2491055 |
Monoclonal anti-HIV-1 Gp120 CAP256.09 (VRC26.03) | John R. Mascola, VRC, NIH | N/A |
Monoclonal anti-HIV-1 Gp120 PGT151 | John R. Mascola, VRC, NIH | N/A |
Monoclonal anti-HIV-1 Gp120 35O22 | NIH AIDS Reagent Program | Cat# 12586 |
Monoclonal anti-HIV-1 Gp120 8ANC195 | Michel C. Nussenzweig, Rockefeller University | RRID: AB_2491037 |
Monoclonal anti-HIV-1 Gp120 447-52D | NIH AIDS Reagent Program | Cat# 4030 |
Monoclonal anti-HIV-1 Gp120 19b | NIH AIDS Reagent Program | Cat# 11436 |
Monoclonal anti-HIV-1 Gp120 48d | NIH AIDS Reagent Program | Cat# 1756 |
Monoclonal anti-HIV-1 Gp120 412d | John R. Mascola, VRC, NIH | N/A |
Goat anti-human IgG-PE | SouthernBiotech | Cat# 2040-09 |
HRP-conjugated anti-human IgG, Fcr fragment Ab | Jackson ImmunoResearch | Cat# 109-035-008 |
Peroxidase AffiniPure Donkey Anti-Rabbit IgG | Jackson ImmunoResearch | Cat# 711-035-152 |
Bacterial and Virus Strains | ||
NEB 5 – alpha Competent E. coli | New England BioLabs | Cat# C2987H |
Biological Samples | ||
Chemicals, Peptides, and Recombinant Proteins | ||
Lectin from Galanthus nivalis | SIGMA-ALDRICH | Cat# L8275-5MG |
BG505.T332N.SOSIP.664 gp140 trimer | This study | N/A |
BG505.T332N.SOSIP.664.113C.429GCG gp140 trimer | This study | N/A |
BG505.T332N.SOSIP.664.113C.431GCG gp140 trimer | This study | N/A |
JR-FL.SOSIP.664 gp140 trimer | This study | N/A |
JR-FL.SOSIP.664.113C.432GCG gp140 trimer | This study | N/A |
DU422.SOSIP.664 gp140 trimer | This study | N/A |
DU422.SOSIP.664.113C.432GCG gp140 trimer | This study | N/A |
M48U1 | Loic Martin, CEA (Martin et., 2003) | N/A |
Recombinant Human sCD4 Protein | R&D Systems | Cat# 514-CD |
Recombinant CD4-Ig2 | NIH AIDS Reagent Program | Cat# 11780 |
Critical Commercial Assays | ||
Luciferase 1000 Assay System | Promega | Cat# E4550 |
QuickChange II Site-Directed Mutagenesis Kit | Agilent | Cat# 200524 |
Deposited Data | ||
BG505.113C-429GCG bound to PGT122 Fab and 35O22 Fab | This study | PDB: 6DE7; Deposition ID: D_1000233685 |
Experimental Models: Cell Lines | ||
Human: HEK 293T, female | ATCC | Cat# CRL-3216 |
Human: HeLa-derived TZM-bl, female | NIH AIDS Reagent Program | Cat# 8129-442 |
Human: HEK 293FS (FreeStyle), female | Thermo Fisher | Cat# R79007 |
Experimental Models: Organisms/Strains | ||
New Zealand white rabbits, female | Purchased from USDA-licensed breeders by Pocono Farm & Laborator y | Animals were identified by implanted ear clips |
Oligonucleotides | ||
Recombinant DNA | ||
Plasmids pPPI4-BG505.T332N.SOSIP.664 | John P. Moore, Weill-Cornell Medical College (Sanders et al., 2013) | N/A |
Plasmids pPPI4-DU422.K295N.D386N.SOSIP.664 | John P. Moore, Weill-Cornell Medical College (Julien et al., 2015) | N/A |
Plasmids pVRC8400-JR-FL.SOSIP.664 | Peter Kwong, NIH (Stewart-Jones et al., 2016) | N/A |
Plasmids HIV-1 BG505 env expression vector | NIH AIDS Reagent Program | Cat# 11518 |
Plasmids pCAGGS HIV-1 JR-FL gp160 expression plasmids | James Binley, San Diego Biomedical Research Institute (Binley et al., 2003) | N/A |
Plasmids pCDNA3.1 HIV-1 clone BaL.26 | NIH AIDS Reagent Program | Cat# 11518 |
Plasmids pSG3 ∆env | NIH AIDS Reagent Program | Cat# 11051 |
Plasmids Panel of Global HIV 1 Env Clones | NIH AIDS Reagent Program | Cat# 12670 |
Software and Algorithms | ||
FlowJo v.9.9.4 | FlowJo, LLC | https://www.www.flowjo.com; RRID: SCR_008520 |
IMGT/V-QUEST | International ImMunoGeneTics Information System; Marie-Paule Lefranc (marie-paule.lefranc@igh.cnrs.fr), University of Montpellier, France |
www.imgt.org; RRID: SCR_012780 |
Pymol | The PyMOL Molecular Graphics System, Version 2.0 Schrödinger, LLC. | https://pymol.org/2/ |
Cloanalyst | Thomas B. Kepler (tbkepler@bu.edu), Boston University | http://www.bu.edu/computationalimmunology/research/software/ |
HKL2000 Suite 6 | HKL Research | www.hkl-xray.com |
Phenix | Paul D. Adams (pdadams@lbl.gov), Lawrence Berkeley Laboratory | www.phenix-online.org; RRID: SCR_014224 |
Crystallographic Object-Oriented Toolkit (COOT) Software | Paul Emsley (paul.emsley@mrc-lmb.cam.ac.uk), Oxford University | https://www2.mrc-lmb.cam.ac.uk/personal/pemsley/coot/; RRID: SCR_014222 |
WebLogo | Steven Brenner, Berkeley (Crooks et al., 2004) | http://weblogo.berkeley.edu |
PRISM 7 | GraphPad | https://www.graphpad.com/scientific-software/prism/ |
Other | ||
TM Adjuvant: Adjuplex | Sigma-Aldrich | A0362 |