Table 4.
Gene ID | Gene | 2ndD | 14thD | Type | Subgroups | Putative function clade and gene function |
---|---|---|---|---|---|---|
length | fold | fold | No. | |||
CL5525.Contig4 | 955 | 476.9a | – | R2R3 | other | Trichome development-regulated: AtMYB82 [69] |
Unigene18972 | 1084 | 17.02a | 0.41b | R1R2R3 | Unknown | |
Unigene35962 | 3506 | 13.97a | 0.49b | R1R2R3 | Unknown | |
Unigene12085 | 975 | 13.54a | 0.32b | R2R3 | 6 | Anthocyanin biosynthes-related: AtMYB75and AtMYB90 [54, 70, 71] |
Unigene41846 | 938 | 4.98a | – | R2R3 | 6 | Secondary cell wall formation-related: AtMYB75 [72] |
Unigene35958 | 3304 | 6.28a | – | R1R2R3 | Unknown | |
CL8695.Contig1 | 1179 | 5.47a | – | R2R3 | 5 | Seed pigmentation biosynthesis -controlled: AtMYB123 [48, 73] |
Unigene11002 | 1229 | 2.93a | – | R2R3 | 5 | |
Unigene7972 | 1143 | 5.41a | – | R2R3 | 9 | Seed germination and reproductive development-related AtMYB17 [74, 75] |
CL1441.Contig4 | 2364 | 2.85a | – | R2R3 | 9 | Petal development: AtMYB16 [76] |
Repressor of cell outgrowth: AtMYB106 [77] | ||||||
Unigene24177 | 714 | 4.91a | – | R2R3 | other | |
Unigene20350 | 1829 | 2.20a | – | R2R3 | other | |
CL12359.Contig1 | 3219 | 2.56a | – | R2R3 | other | |
CL5017.Contig2 | 1322 | 4.04a | 0.34b | R2R3 | 1 | Hypersensitive response: AtMYB30Cooperates with BES1 to regulate |
CL8708.Contig1 | 1933 | 2.91a | – | R2R3 | 1 | brassinosteroid-induced gene Expression; abiotic stress response, SA–mediated pathway AtMYB30 [77] |
Unigene13855 | 767 | 3.84a | – | R2R3 | 15 | Epidermal cell fate specification: AtMYB23 [78] Trichome development: AtMYB0 and AtMYB23, |
CL7877.Contig1 | 887 | 3.25a | – | R2R3 | 15 | Root hair patterning-controlled AtMYB66 [79] |
Unigene1868 | 527 | 2.68a | – | R1 | Unknown | |
Unigene16731 | 1118 | 2.41a | – | R2R3 | 14 | Axillary meristem initiation in roots-related: AtMYB36 [80] |
CL3134.Contig13 | 4926 | 2.40a | – | R1R2R3 | Unknown | |
CL13057.Contig1 | 995 | 2.31a | – | R2R3 | 4 | The battle against UV by repressing C4H: AtMYB4 [81] |
CL13057.Contig2 | 827 | – | 2.64a | R2R3 | 4 | |
CL2339.Contig1 | 1129 | 2.24a | – | R2R3 | 21 | Lignin, xylan and cellulose biosynthesis-regulated: AtMYB52, AtMYB54 and AtMYB69 [82] |
Ovule and fruit development: AtMYB117 [83] | ||||||
ABA hypersensitivity and drought tolerance: AtMYB52 [84] | ||||||
CL8255.Contig3 | 1314 | – | 2.02a | R2R3 | 7 | Flavonol glycosides-related: AtMYB11, AtMYB12 and AtMYB111 [34] |
CL6408.Contig3 | 1494 | 2.01a | – | R2R3 | 2 | Shoot apex morphogenesis: AtMYB13 [85] |
CL9344.Contig1 | 1068 | – | 0.25b | R2R3 | 2 | Cold stress tolerance: AtMYB14 and AtMYB15 [86, 87] |
CL6408.Contig1 | 1557 | – | 0.45b | R2R3 | 2 | |
CL5350.Contig2 | 1322 | – | 0.16b | R2R3 | 2 | |
Unigene48919 | 574 | 0.41b | – | R2R3 | 2 | |
CL1581.Contig2 | 1552 | – | 0.18b | R1 | Unknown | |
CL7764.Contig2 | 980 | – | 0.15b | R1 | Unknown | |
Unigene6794 | 537 | – | 2.47a | R2R3 | other | |
Unigene36358 | 1700 | – | 2.01a | R2R3 | other | AS1 leaf morphogenesis (polarity specificity) and plant immune response: AtMYB91 [88]; |
Rough-sheath development: AtMYB91 [89] | ||||||
Unigene11308 | 1618 | – | 2.10a | R2R3 | 13 | Stomatal closure: AtMYB61 [90]; |
Multiple aspects of plant resource allocation-controled: AtMYB61 [91] | ||||||
Unigene38120 | 1427 | – | 0.47b | R2R3 | 22 | Stomatal closure-regulated: AtMYB44,AtMYB70, AtMYB73 and AtMYB77 [92, 93] |
Auxin signaling pathway- modulated: AtMYB77 [94]; | ||||||
Unigene39226 | 735 | 0.49b | – | R2R3 | 20 | GA metabolism and signaling involved in regulation starvation responses:AtMYB62 [95]; |
Cell separation processes-related: AtMYB116 [96] | ||||||
Unigene2945 | 935 | 0.44b | – | R1 | Unknown |
Note: “a”indicates significant up-regulation; “–”indicates no difference; “b”indicates significant down-regulation. Unknown and other indicate Unigene is not grouped