1 |
Mixed |
1, 2, 4, 6, 8, 10, 12, 14, 16, 18, 20, 22, 24 |
Oligo(d)T |
no |
yes |
no |
Illumina single-end |
HiScan SQ |
2 |
Mixed |
1, 2, 4, 6, 8, 10, 12, 14, 16, 18, 20, 22, 24 |
Random |
no |
yes |
no |
Illumina paired-end |
HiScan SQ |
3 |
1 h |
1 |
Oligo(d)T |
no |
yes |
no |
PacBio Isoform seq |
RSII |
4 |
4 h |
4 |
Oligo(d)T |
no |
yes |
no |
PacBio Isoform seq |
RSII |
5 |
8 h |
8 |
Oligo(d)T |
no |
yes |
no |
PacBio Isoform seq |
RSII |
6 |
Mixed |
1, 2, 4, 6, 8 |
Oligo(d)T |
no |
yes |
Bluepippin 5kb+ |
PacBio Isoform seq |
RSII |
7 |
Mixed |
1, 2, 4, 6, 8 |
Oligo(d)T |
no |
yes |
Bluepippin 0.8-2kb |
PacBio Isoform seq |
RSII |
8 |
Mixed |
1, 2, 4, 6, 8 |
Oligo(d)T |
no |
yes |
Bluepippin 2-3kb |
PacBio Isoform seq |
RSII |
9 |
Mixed |
1, 2, 4, 6, 8 |
Oligo(d)T |
no |
yes |
Bluepippin 3-5kb |
PacBio Isoform seq |
RSII |
10 |
Mixed |
1, 2, 4, 6, 8 |
Oligo(d)T |
no |
yes |
Bluepippin 5kb+ |
PacBio Isoform seq |
RSII |
11 |
Mixed |
1, 4, 8 |
Oligo(d)T |
no |
yes |
Manual Gel 1-2kb |
PacBio Isoform seq |
RSII |
12 |
1 h |
1 |
Oligo(d)T |
no |
yes |
Manual Gel 3kb+ |
PacBio Isoform seq |
RSII |
13 |
1 h |
1 |
Oligo(d)T |
no |
yes |
Manual Gel 2-3kb |
PacBio Isoform seq |
RSII |
14 |
4 h |
4 |
Oligo(d)T |
no |
yes |
Manual Gel 3kb+ |
PacBio Isoform seq |
RSII |
15 |
4 h |
4 |
Oligo(d)T |
no |
yes |
Manual Gel 2-3kb |
PacBio Isoform seq |
RSII |
16 |
8 h |
8 |
Oligo(d)T |
no |
yes |
Manual Gel 3kb+ |
PacBio Isoform seq |
RSII |
17 |
8 h |
8 |
Oligo(d)T |
no |
yes |
Manual Gel 2-3kb |
PacBio Isoform seq |
RSII |
18 |
Mixed |
1, 2, 4, 6, 8 |
Random |
no |
yes |
no |
PacBio Isoform seq |
RSII |
19 |
1 h |
1 |
Random |
no |
yes |
no |
PacBio Isoform seq |
RSII |
20 |
4 h |
4 |
Random |
no |
yes |
no |
PacBio Isoform seq |
RSII |
21 |
8 h |
8 |
Random |
no |
yes |
no |
PacBio Isoform seq |
RSII |
22 |
Mixed |
1, 4, 8 |
Random |
no |
yes |
Manual Gel 3kb+ |
PacBio Isoform seq |
RSII |
23 |
Mixed |
1, 4, 8 |
Random |
no |
yes |
Manual Gel 1-2kb |
PacBio Isoform seq |
RSII |
24 |
Mixed |
1, 4, 8 |
Random |
no |
yes |
Manual Gel 2-3kb |
PacBio Isoform seq |
RSII |
25 |
1 h |
1 |
Oligo(d)T |
no |
no |
no |
PacBio 2kb |
RSII |
26 |
1 h |
1 |
Oligo(d)T |
no |
no |
no |
PacBio Very Low Input |
RSII |
27 |
2 h |
2 |
Oligo(d)T |
no |
no |
no |
PacBio 2kb |
RSII |
28 |
2 h |
2 |
Oligo(d)T |
no |
no |
no |
PacBio Very Low Input |
RSII |
29 |
4 h |
4 |
Oligo(d)T |
no |
no |
no |
PacBio 2kb |
RSII |
30 |
4 h |
4 |
Oligo(d)T |
no |
no |
no |
PacBio Very Low Input |
RSII |
31 |
6 h |
6 |
Oligo(d)T |
no |
no |
no |
PacBio 2kb |
RSII |
32 |
6 h |
6 |
Oligo(d)T |
no |
no |
no |
PacBio Very Low Input |
RSII |
33 |
8 h |
8 |
Oligo(d)T |
no |
no |
no |
PacBio 2kb |
RSII |
34 |
8 h |
8 |
Oligo(d)T |
no |
no |
no |
PacBio Very Low Input |
RSII |
35 |
12 h |
12 |
Oligo(d)T |
no |
no |
no |
PacBio 2kb |
RSII |
36 |
12 h |
12 |
Oligo(d)T |
no |
no |
no |
PacBio Very Low Input |
RSII |
37 |
Mixed |
1, 2, 4, 6, 8 |
Oligo(d)T |
no |
yes |
no |
PacBio Isoform seq |
Sequel |
38 |
Mixed |
1, 2, 3, 4, 5, 6, 7, 8, 9, 12, 18, 24 |
Oligo(d)T |
no |
no |
no |
ONT Direct RNA |
MinION |
39 |
Mixed |
1, 2, 3, 4, 5, 6, 7, 8, 9, 12, 18, 24 |
Oligo(d)T |
yes |
yes |
no |
ONT cDNA |
MinION |
40 |
Mixed |
1, 2, 3, 4, 5, 6, 7, 8, 9, 12, 18, 24 |
Oligo(d)T |
no |
yes |
no |
ONT cDNA |
MinION |