TABLE 3.
Clonal lineages and origins of the MRSA and MSSA isolates used in this study
| MLST type or clonal complex (n) | spa type(s) (no. of isolates) | Origin(s) | Disease/colonization |
|---|---|---|---|
| ST398 (67) | t011 (33), t034 (23), t571 (3), t108 (1), t109 (1), t1451 (2), t1184 (1), t1197 (1), t6867 (2) | 29 poultry, 25 human, 5 pet animal, 1 dairy cow, 3 animal,a 4 veterinary practice interior | Poultry (29 colonized), human (12 diseased, 8 colonized, 5 NDb), pet animal (5 diseased), dairy cow (1 diseased), animal (3 ND), veterinary practice (4) |
| ST225, CC5 (22) | t003 (15), t002 (2), t067 (1), t214 (1), t311 (1), t481 (1), t7333 (1) | 22 human | Human (7 diseased, 3 colonized, 12 ND) |
| CC22 (19) | t005 (3), t022 (1), t025 (1), t032 (10), t1214 (1), t310 (1), t608 (1), t9062 (1) | 19 human | Human (9 diseased, 4 colonized, 6 ND) |
| CC8 (9) | t008 (6), t197 (1), t334 (1), t068 (1) | 9 human | Human (4 diseased, 3 colonized, 2 ND) |
| ST09 (8) | t1430 (7), t587 (1) | 7 poultry, 1 human | Poultry (7 colonized), human (1 diseased) |
| ST15 (6) | t084 (5), t094 (1) | 6 human | Human (5 diseased, 1 ND) |
| CC45 (5) | t015 (1), t303 (1), t004 (1), t1574 (1), t095 (1) | 5 human | Human (5 diseased) |
| ST133 (4) | t1181 (2), t6384 (1), t1403 (1) | 3 wild boar, 1 dairy cow | Wild boar (3 colonized), dairy cow (1 diseased) |
| CC30 (4) | t018 (1), t019 (2), t1347 (1) | 3 human, 1 dairy cow | Human (1 diseased, 1 colonized, 1 ND), dairy cow (1 diseased) |
| ST97 (4) | t267 (1), t224 (1), t359 (1), t521 (1) | 3 human, 1 dairy cow | Human (3 ND), dairy cow (1 diseased) |
| ST7 (4) | t091 (3), t1867 (1) | 4 human | Human (3 colonized, 1 ND) |
| CC80 (3) | t044 (2), t203 (1) | 3 human | Human (3 diseased) |
| CC121 (3) | t159 (1), t435 (1), t8660 (1) | 3 human | Human (1 diseased, 2 ND) |
| ST59 (3) | t163 (1), t437 (1), t216 (1) | 3 human | Human (2 diseased, 1 colonized) |
| ST1 (3) | t127 (2), t922 (1) | 2 human, 1 dairy cow | Human (2 diseased), dairy cow (1 diseased) |
| ST34 (3) | t089 (1), t166 (1), t2080 (1) | 3 human | Human (1 diseased, 1 colonized, 1 ND) |
| ST101 (2) | t056 (1), t150 (1) | 2 human | Human (2 diseased) |
| ST152 (2) | t595 (1), t355 (1) | 2 human | Human (1 colonized, 1 ND) |
| ST425 (2) | t6368 (1), t6782 (1) | 2 wild boar | Wild boar (2 colonized) |
| ST88 (1) | t1814 (1) | 1 human | Human (1 diseased) |
| ST772 (1) | t657 (1) | 1 human | Human (1 ND) |
| ST1643 (1) | t6385 (1) | 1 wild boar | Wild boar (1 colonized) |
| ST12 (1) | t160 (1) | 1 human | Human (1 diseased) |
| ST25 (1) | t078 (1) | 1 human | Human (1 diseased) |
| ST504 (1) | t529 (1) | 1 dairy cow | Dairy cow (1 diseased) |
| ST20 (1) | t1023 (1) | 1 dairy cow | Dairy cow (1 diseased) |
| ST50 (1) | t518 (1) | 1 dairy cow | Dairy cow (1 diseased) |
| ST1380 (1) | t2873 (1) | 1 dairy cow | Dairy cow (1 diseased) |
a
Animal species not documented.
b
ND, disease or colonization status not documented.