TABLE 4.
Effector profiles of NI1 and NI38 for species-specific effectors within the bacterial spot xanthomonads
| Effectora | Locus tagb in strain: |
|
|---|---|---|
| NI1 | NI38 | |
| Found uniquely in X. euvesicatoria | ||
| AvrBs1 | Absent | Absent |
| XopC1 | Absent | Ga0128168_10566 |
| XopJ1 | Absent | Ga0128168_10111 |
| XopJ3 (AvrRxv gene) | Absent | Ga0128168_12162 |
| XopO | Absent | Ga0128168_12403 |
| XopAA | Absent | Ga0128168_11918 |
| XopAJ | Ga0071335_10438 | Ga0128168_10823 |
| Found uniquely in X. perforans | ||
| XopC2 | Ga0071335_101102 | Ga0128168_101017, Ga0128168_101018 |
| XopJ4 | Absent | Absent |
| XopAE | Ga0071335_113188 | Ga0128168_11984, Ga0128168_11985 |
| XopAF (AvrXv3 gene) | Ga0071335_13475 | Absent |
| Found uniquely in X. gardneri | ||
| AvrBs1 | Absent | Absent |
| AvrHah1 | Ga0071335_1551/Ga0071335_1571c | Absent |
| XopAO | Absent | Absent |
| XopAQ | Ga0071335_1192U | Absent |
| XopAS | Absent | Absent |
| Found in X. euvesicatoria and X. perforans but absent in X. vesicatoria and X. gardneri | ||
| XopE1 | Ga0071335_10358U | Ga0128168_10456Xe, Ga0128168_109715U |
| XopF2 | Absent | Ga0128168_103921U |
| XopI | Ga0071335_12619Xe | Ga0128168_10765Xe |
| XopP | Ga0071335_101103Xp, Ga0071335_13041Xp, Ga0071335_1451U, Ga0071335_1461U | Ga0128168_101020U, Ga0128168_101021Xe |
| XopV | Ga0071335_13449U | Ga0128168_100834NI1 |
| XopAK | Ga0071335_111115U | Ga0128168_11919Xe |
| XopAP | Ga0071335_107226U | Ga0128168_100746Xe |
| Found in X. euvesicatoria, X. perforans, and X. vesicatoria: AvrBsT (YopJ) | Ga0071335_1442U | Absent |
| Found in X. gardneri and X. euvesicatoria but absent in X. perforans and X. vesicatoria: XopB | Absent | Ga0128168_114314 |
a
Effectors unique to other species combinations, such as X. gardneri and X. vesicatoria, which were not found in NI1 or NI38, are not shown.
b
Superscript Xe, Xp, U, and NI1 indicate the X. euvesicatoria, X. perforans, unique, and NI1 allele types, respectively. For effectors present only in one species, the allele type is that of the species unless otherwise indicated.
c
The coding region for the AvrHah1 gene is split into two locus tags located on different contigs.