Table 3. Thermodynamic parameters for 19wt and its mutants in 5K buffer.
Name | Mutation | Potentially affecting | T m (°C)b | ΔTm (°C) | Hysteresis (°C)c |
---|---|---|---|---|---|
19wt | None | – | 76.7 ± 0.6 | – | 6.4 |
M1 | G5T | G5–C21 base pair | 72.3 ± 0.4 | −4.4 | 4.2 |
M2 | G5T–A6T | G5–C21 and A6–T19 base pairs | 78.5 ± 1.0 | +1.8 | 6.1 |
M3 | G5T–A6T–A22T | G5–C21 base pair and A6–T19–A22 triad | 71.3 ± 0.4 | −5.4 | 4.7 |
M4 | C21A | G5–C21 base pair | 76.1 ± 0.5 | −0.6 | 7.3 |
M5 | G5T–C21A | G5–C21 base pair: both nta | 73.0 ± 0.4 | −3.7 | 4.7 |
M6 | G5A–C21A | G5–C21 base pair: both nt | 69.6 ± 1.6 | −7.1 | 6.7 |
M7 | G5T–C21T | G5–C21 base pair: both nt | 74.1 ± 0.9 | −2.6 | 4.5 |
M8 | C13A | π–π stacking between C13 and Quartet 1 | 76.4 ± 0.3 | −0.3 | 6.2 |
aNote the possibility of forming a new T–A Watson–Crick base pair.
b T m was measured from heating curves only.
cHysteresis refers to the difference in Tm measured from heating and cooling profiles; the latter is systematically shifted towards lower temperatures by 4.2 to 7.3°C.