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| Method | Time | Permutation |
|---|---|---|
| GSA-SNP2 | 1.53 min | |
| GSA-SNP1 | 1.49 min | |
| MAGMA-mean | 3.03 min | |
| MAGMA-top1 | 34.85 min | |
| MAGMA-multi | 41.85 min | |
| iGSEA4GWAS | 30 min | |
| MAGENTA | 114.18 min | 10 000 |
| Gowinda (P = 0.001) | 0.62 min | 10 000 |
| Gowinda (P = 0.01) | 0.80 min | 10 000 |
| Gowinda (P = 0.05) | 2.01 min | 10 000 |
| INRICH (P1 = 1E-6) | 0.85 min | 10 000 |
| INRICH (P1 = 1E-4) | 2.41 min | 10 000 |
| sARTP | 10.41 days | 100 000 |
