Table 1:
Sequencing datasets and Illumina assemblies used to evaluate the performance of Fast-SG
| Long-read datasets | ||||||
|---|---|---|---|---|---|---|
| Number of reads | Average read length (bp) | Technology | Machine | Illumina assemblies | ||
| Number of contigs | N50 | |||||
| 164 472 | 9 009 | ONT | R9.2 | 140 | 106 241 | |
| E.coli K12 | 1 192 955 | 4 412 | PacBIO | Sequel System | ||
| 22 391 084 | 298 | Illumina | MiSeq | |||
| S.cerevisiae W303 | 594 243 | 4 795 | PacBio | PacBio | 890 | 52 324 |
| 561 176 | 9 633 | PacBio | Sequel System | 2 384 | 320 571 | |
| A. thaliana (Ler-0) | 46 129 480 | 300 | Illumina | MiSeq | ||
| Human (NA12878) | 1 415 868 | 16 324 | ONT | R9.4 | 37 393 | 202 174 |
| Short-read datasets | ||||||
| Number of reads | Read length | Insert size | SRA/ENA | Illumina assemblies | ||
| Number of contigs | N50 | |||||
| S.aureus | 3 494 070 | 37 | 3 500 | SRR022865 | 170 | 47 016 |
| R.sphaeroides | 2 050 868 | 101 | 3 500 | SRR034528 | 577 | 15 351 |
| P.falciparum (short) | 52 542 302 | 76 | 550 | ERR034295 | 9 318 | 2 995 |
| P.falciparum (long) | 1 562 080 | 75 | 3 000 | ERR163027 | ||
| H.sapiens chr14 | 22 669 408 | 101 | 2 600 | SRR067771 | 19 936 | 12 963 |
Further details are provided in the Data Description subsection and in the Supplementary Material 1.