Table 4. Data for selected proteins from mass spectrometry comparison of GFP-Mto1[9A1-NE]-HTB interactomes in wild-type (nup146+) and nup146[∆FG5-12] cells.
Peptide counts and label-free quantification (LFQ) values for selected proteins from the two replicate experiments contributing to the graph in Figure 6F. Complete datasets are in Supplementary file 6.
| Protein | Replicate 1 (E170214) | Replicate 2 (E170306) | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Peptides from strain KS9021 | Peptides from strain KS9077 | LFQ intensity from strain KS9021 | LFQ intensity from strain KS9077 | LFQ ratio | Peptides from strain KS9021 | Peptides from strain KS9077 | LFQ intensity from strain KS9021 | LFQ intensity from strain KS9077 | LFQ ratio | |
| Alp7 | 17 | 15 | 1.4e8 | 1.4e8 | 1.0 | 16 | 16 | 1.0e8 | 8.2e7 | 1.3 |
| Crm1 | 31 | 17 | 3.4e8 | 9.2e7 | 3.6 | 27 | 18 | 1.7e8 | 6.1e7 | 2.9 |
| Mto1 | 62 | 61 | 2.7e11 | 2.6e11 | 1.0 | 55 | 54 | 1.7e11 | 1.8e11 | 0.9 |
| Mto2 | 12 | 12 | 6.0e9 | 5.0e9 | 1.2 | 13 | 13 | 3.8e9 | 3.1e9 | 1.2 |
| Nsp1 | 11 | 3 | 8.3e7 | 2.7e7 | 3.0 | 9 | 4 | 3.5e7 | 1.7e7 | 2.1 |
| Nup146 | 29 | 6 | 2.1e8 | 1.5e7 | 13.9 | 31 | 10 | 1.4e8 | 1.5e7 | 9.2 |
| Nup82 | 13 | 10 | 1.1e8 | 4.0e7 | 2.8 | 12 | 11 | 4.9e7 | 2.5e7 | 2.0 |
| Plo1 | 17 | 17 | 1.5e8 | 1.3e8 | 1.1 | 17 | 17 | 1.1e8 | 8.1e7 | 1.3 |