Table 1. Details of RNA-seq datasets used in analyses.
Nucleotide databases and corresponding IDs of analyzed datasets. The hDRG samples were sequenced as part of the study and deposited in dbGAP/SRAdb, while the rest of the datasets were obtained from the dbGAP, SRAdb, GEO, ENCODE and ENA (ArrayExpress) databases. Sex of the samples and strains for the mouse datasets are also noted.
| Tissue | Human data id | Mouse data id |
|---|---|---|
| DRG | SRA: SRR3734492 (F), SRR3734493 (F), SRR3734494 (F) | SRA: SRR869619 (C57BL/6, F), SRR869620 (C57BL/6, F), SRR869621 (C57BL/6, F) |
| Spinal cord | SRA: SRR1330498 (F), SRR1369219 (F) | SRA: SRR789190 (C57BL/6, F), SRR789191 (C57BL/6, F) |
| Frontal cortex | SRA: SRR1413562 (F), SRR1432123 (F) | SRA: SRR1646331 (C57BL/6, M), SRR1646335 (C57BL/6, M) |
| Hippocampus | SRA: SRR1348339 (F), SRR1348424 (F) | SRA: SRR1646332 (C57BL/6, M), SRR1646336 (C57BL/6, M) |
| Nucleus accumbens | SRA: SRR598196 (F), SRR598253 (F) | SRA: SRR647495 (C57BL/6, M), SRR647501 (C57BL/6, M), SRR647498 (C57BL/6, M) |
| Caudate nucleus (h)/Striatum (m) | SRA: SRR598428 (F), SRR1332856 (F) | SRA: SRR1519958 (CBAxC57BL/6, F), SRR1519959 (CBAxC57BL/6, F), SRR1519960 (CBAxC57BL/6, F) |
| Skeletal muscle | ENA: ERR579149 (M), ERR579152 (F), ERR579141 (F) | SRA: SRR545833 (C57BL/6, M), SRR545834 (C57BL/6, M) |
| Heart | ENCODE: ENCFF001RTS (F), ENCFF770NYA (F) | ENCODE: ENCFF001IVS (C57BL/6, pooled M+F), ENCFF001IVU (C57BL/6, pooled M+F) |
| Lung | SRA: SRR820596 (F), SRR821302 (F) | SRA: SRR453156 (C57BL/6, pooled M+F), SRR453157 (C57BL/6, pooled M+F), SRR453158 (C57BL/6, pooled M+F), SRR453159 (C57BL/6, pooled M+F) |
| Whole blood | SRA: SRR614503 (F), SRR607042 (F) | SRA: SRR1774203 (C57BL/6, M), SRR1774204 (C57BL/6, M), SRR1774205 (C57BL/6, M), SRR1774206 (C57BL/6, M) |
| Small Intestine | SRA: SRR1957202 (F) | ENCODE: ENCFF996KVO (C57BL/6, pooled M+F), ENCFF001JLL (C57BL/6, pooled M+F), ENCFF001JLQ (C57BL/6, pooled M+F) |
| Liver | ENCODE: ENCFF187OKV (M) | ENCODE: ENCFF001JAT (C57BL/6, pooled M+F), ENCFF001JAW (C57BL/6, pooled M+F), ENCFF001RTN (C57BL/6, pooled M+F), ENCFF001RTD (C57BL/6, pooled M+F) |
| Tibial Nerve | SRA: SRR1312622 (F), SRR1312802 (F) | |
| Olfactory epithelium | SRA: SRR1646337 (C57BL/6, M), SRR1646333 (C57BL/6, M) |