Table 2.
Summary of whole genome sequence characteristics of analyzed Macrococcus spp.
| Genome | M. caseolyticus subsp. caseolyticus subsp. nov. CCM 3540T | M. caseolyticus subsp. hominis subsp. nov. CCM 7927T | M. goetzii sp. nov. CCM 4927T | M. epidermidis sp. nov. CCM 7099T | M. bohemicus sp. nov. CCM 7100T |
|---|---|---|---|---|---|
| WGS Project no. | PZJF00000000 | MJBI00000000 | MJBJ00000000 | PZJH00000000 | PZJG00000000 |
| Size (Mb) | 2.06 | 2.10 | 2.59 | 2.48 | 2.30 |
| No. of contigs (>200 bp) | 42 | 37 | 33 | 31 | 29 |
| N50 | 72 809 | 189 524 | 459 952 | 214 089 | 260 501 |
| Mean Coverage | 67 | 66 | 313 | 264 | 272 |
| G+C content (mol%) | 36.56 | 36.79 | 33.95 | 33.97 | 34.23 |
| G+C content in core genome (mol%) | 36.77 | 37.02 | 34.04 | 34.08 | 34.32 |
| Coding sequences | 2140 | 2149 | 2679 | 2588 | 2462 |
| No. of prophages | 1 | 1 (ϕMC1) | 2 (ϕMG1, ϕMG2) | 1 (ϕME1) | 1 (ϕMB1) |
| SCC-like elements | ψSCCCCM3540 | ψSCCCCM7927 | MgCI-ψSCCmecCCM4927 | MeCI-ψSCCCCM7099 | MbCI-ψSCCCCM7100 |
| other chromosomal/resistance island | 1 | 1 (McRICCM7927) | – | 1 (MeCICCM7099) | 2 (MbRI-1CCM7100, MbRI-2CCM7100) |
| PICI (Phage-inducible chromosomal island) | 3 | – | 2 (MgCI-1CCM4927, MgCI-2CCM4927) | – | 1 (MbCICCM7100) |
| No. of plasmids | N/A | 1 (pZKMH1) | 1 (pZKMG1) | 1 (pZKME1) | 2 (pZKMB1, pZKMB2) |
| CRISPR | – | – | – | – | 1 (type II-C) |
| virulence factors | N/A | fbpAc; vegd; hly-IIIe; capf | sdr locia; PIAb; fbpAc; vegd; hly-IIIe; capf; adsAg | sdr locia;PIAb; fbpAc; vegd; hly-IIIe; capf | PIAb; fbpAc; vegd; hly-IIIe;capf |
a
sdr loci are composed of genes sdrB, sdrC and sdrD.
b
ica locus encoding polysacharide intercellular adhesin (PIA).
c
fibronectin binding protein A gene (fbpA).
d
biofilm-associated gene (veg).
e
hemolysin III family gene (hly-III).
f
capsule gene clusters (cap).
g
putative gene for adenosine synthase A (adsA).
N/A, not analyzed.
–, not detected.