Diagram illustrating changes in the expression of different markers during thymocyte maturation and related molecular events. Immature cells entering the cortex did not express CD4, CD8, or CD3 (triple-negative stage, TN). During cortical thymocyte maturation, CD4 and CD8 were coexpressed (double-positive stage, DP), like CD3, which was primarily cytoplasmic (cCD3) before being located at the cell surface (sCD3). Mature thymocytes in the medulla express either CD4 or CD8 (simple-positive stage, SP). CD6 expression appeared at a late DP stage. RAG-1 and RAG-2 were first involved in TCRβ chain rearrangements; their levels were substantially repressed during population expansion, which took place at the DP stage and then increased to induce α chain rearrangements. PBR and Bcl-2 expression were also bimodal, and increased, especially during DP to SP transition concomitantly with the selection process.