TABLE 1A.
GENES SIGNIFICANTLY CHANGED WITH EXERCISE IN THE RAT SPINAL CORD: THORACIC REGION
| Probe Set | Gene | FC | Dchip p | CyberT p | CyberT ln p | Set |
|---|---|---|---|---|---|---|
| L03382_at | phospholamban | −313.3 | 1.0E-02 | 1 | ||
| M28648_s_at | Na,K-ATPase alpha 2 subunit | −1.7 | 1.5E-03 | 7.2E-04 | 2 | |
| D00189_at | ATPase, Na+K+ transporting, alpha 3 subunit | −1.7 | 2.7E-03 | 1.7E\03 | 2 | |
| M83681_at | Rab3d RAB3D, member RAS oncogene family | −1.5 | 5.0E-02 | 3 | ||
| rc_AA892772_at | lysozyme | −1.7 | 1.6E-03 | 1.9E-03 | 5 | |
| rc_AA892559_at | cilliary neutrotropic factor | 1.5 | 3.3#-02 | 3.2E-03 | 3.3E-03 | 5 |
| M27207mRNA_s_at | alpha-1 type I collagen 3′ UTR | 1.5 | 6.5E-03 | 4.2E-03 | 5 | |
| Z78279_at | collagen alpha 1 type I | 1.5 | 3.7E-03 | 3.2E-03 | 5 | |
| U59240_at | N-tropomodulin | 4.0 | 3.0E-02 | 8.7E-05 | 2.7E-05 | 6 |
| rc_AA858586_at | ribosomal protein L18 | 2.8 | 5.6E-03 | 8.6E-03 | 6 | |
| U64451_at | acyl-coenzyme A dehydrogenase, short-branched chain | 2.1 | 4.8E-02 | 2.1E-03 | 2.7E-03 | 6 |
| AF083331_at | kinesin-like protein KIF1B (KIF1B) | 2.1 | 2.3E-02 | 2.9E-03 | 3.0E-03 | 6 |
| X66840cds_s_at | microtubule associated protein 1A | 1.6 | 3.4E-02 | 6 | ||
| U14007_at | aquaporin 4 | 1.5 | 2.2E-03 | 1.8E-03 | 6 | |
| rc_AA891595_at | ESTs similar to Homo sapiens ROCK II/Rho kinase | 2.1 | 3.0E-02 | 7 | ||
| M22670cds_at | alpha-2-macrogobulin | 2.0 | 4.3E-03 | 9.5E-03 | 7 | |
| M33648_at | mitochondrial 3-hydroxy-3-methylglutaryl-CoA synthase | 2.0 | 3.8E-02 | 4.8E-04 | 4.1E-04 | 7 |
| rc_AA875471_at | ESTs | 1.8 | 2.3E-03 | 3.3E-03 | 7 | |
| rc_AA800566_at | similar to human APH1A (gamma secretase subunit) | 1.7 | 7.2E-03 | 2.4E-04 | 3.0E-04 | 7 |
| AF077354_at | heat shock 70 kDA protein 4 | 1.6 | 5.0E-02 | 2.4E-03 | 2.5E-03 | 7 |
| D64047_at | phosphatidylinositol 3-kinase p55 subunit | 1.6 | 6.3E-03 | 8.1E-03 | 7 | |
| rc_AI171959_at | uraminidase 2 | 1.5 | 2.0E-02 | 7 | ||
| M34176_s_at | beta adaptin | 1.5 | 6.8E-03 | 9.9E-03 | 7 | |
| U48592_g_at | interleukin 1 receptor accessory protein | 1.5 | 2.5E-02 | 2.1E-03 | 3.1E-03 | 7 |
| M18331_at | protein kinase C epsilon subspecies | 1.5 | 4.5E-02 | 7 | ||
| D50664_at | small intestine mRNA for oligopeptide transporter | 7.9 | 3.0R-02 | 8 | ||
| D26492_at | dynein-like protein 1 | 3.4 | 3.6E-02 | 8 | ||
| U21662_at | beta-1,2-N-acetylgucosaminyltransferase II (Gntll) | 2.5 | 2.4E-03 | 8.9E-03 | 8 | |
| L31622_at | cholinergic receptor, nicotinic, beta polypeptide 1 | 2.4 | 1.4E-03 | 7.1E-03 | 8 | |
| X15143cds_g_at | beta A3/A1 crystallin | 1.9 | 1.3E-02 | 2.9E-03 | 8.9E-03 | 8 |
| S71196mRNA_s_at | brain-derived neurotrophin factor exon 1 | 1.9 | 6.8E-03 | 9.3E-03 | 8 | |
| Z22812_at | interleukin-1 receptor type 2 | 1.8 | 5.4E-03 | 6.9E-03 | 8 | |
| rc_AI639305_g_at | ESTs | 1.8 | 7.0E-03 | 3.8E-03 | 7.1E-03 | 8 |
| AF005099_at | neuronal pentraxin receptor | 1.8 | 3.8E-02 | 8 | ||
| AJ001380_at | testis-specific protein on Y | 1.7 | 1.1E-03 | 2.8E-03 | 8 | |
| AB004277_at | protocadherin 5 alpha | 1.6 | 3.8E-02 | 6.8E-04 | 6.8E-04 | 8 |
| rc_AI639257_at | ESTs | 1.6 | 7.1E-03 | 8.0E-03 | 8 | |
| AB003478_at | betal ,3-galactosyltransferase | 1.6 | 3.6E-02 | 8 | ||
| M38566mRNA_s_at | cytochrome P450, family 27, subfamily a, polypeptide 1 | 1.6 | 5.0E-03 | 4.2E-03 | 8 | |
| D0068-_at | plasma glutathione peroxidase precursor | 1.5 | 2.0E-02 | 1.6E-03 | 1.2E-03 | 8 |
| AF00900_g_at | nucleoporin p45 (p58/p45) | 1.5 | 4.4E-02 | 8 | ||
| rc_AA860055_g_at | ESTs | 8.7 | 4.6E-02 | 9 | ||
| M72711_at | 7-Oct | 6.0 | 2.6E-02 | 9 | ||
| rc_AI639251_at | ESTs | 3.3 | 6.9E-03 | 5.2E-03 | 9 | |
| X05034_at | C2A gene for prostatic binding protein (PBP) | 3.1 | 1.7E-02 | 3.4E-04 | 1.0E-03 | 9 |
| D10831_s_at | LECAM1 | 2.8 | 4.3E-02 | 1.7E-03 | 6.9E-03 | 9 |
| AB002582_at | beta-alanine-pyruvate aminotransferase | 2.8 | 9.1E-04 | 3.5E-03 | 9 | |
| rc_AI639161_at | ESTs | 2.7 | 1.7E-03 | 6.0E-03 | 9 | |
| AF041066_at | ribonuclease 4 | 1.6 | 7.7E-04 | 5. IE-04 | 2.7E-04 | 9 |
Affymetrix probe set identifiers are given in the first column; current information on the probe set sequence and unknown sequences at time of publication can be obtained from the Affymetrix Web site (http://www.affymetrix.com/analysis/index.affx). Gene descriptions, where available, are given in column 2. The probe sets are grouped by the clusters (last column), and within the sets are ranked by fold change. For probe sets identified by both Dchip and CyberT the fold change shown is that determined by Dchip. The p values and ln p values are given for each probe set whether they were selected in Dchip, CyberT, or both.