Table 3. Summary of haplotype and distance analyses for COI, with specification of excluded sequences, alignment length, number of haplotypes, and uncorrected intra- and interspecific distances.
Species number | Number of specimens | Removed sequences in haplotype analysis | Original alignment length | Pruned alignment length | Number of haplotypes | Uncorrected intraspecific distance |
Minimum uncorrected interspecific distance (%) | Maximum uncorrected interspecific distance (%) |
---|---|---|---|---|---|---|---|---|
1 | 63 | 658 | 555 | 12 | 0–1.9 | 15.6–17.7 (7) | 17.4–20.3 (8) | |
2 | 32 | 658 | 569 | 25 | 0–2.4 | 13.9–16.0 (3) | 19.6–21.5 (21) | |
3 | 50 | 658 | 615 | 44 | 0–2.3 | 13.9–16.0 (2) | 20.1–22.4 (21) | |
4 | 14 | 658 | 615 | 7 | 0–1.0 | 9.9–10,7 (26) | 20.9–22.7 (10) | |
5 | 19 | 658 | 600 | 10 | 0–1.1 | 12.3–14.0 (16) | 19.6–21.6 (15) | |
6 | 33 | 1314_6 | 658 | 609 | 10 | 0–0.8 | 8.8–10.8 (7) | 19.2–20.4 (27) |
7 | 12 | 658 | 627 | 8 | 0–0.6 | 8.8–10.8 (6) | 19.2–20.9 (4) | |
8 | 40 | 1203_8 | 658 | 612 | 33 | 0–3.1 | 10.5–12.8 (7) | 19.1–21.5 (15) |
9 | 2 | 649 | 603 | 2 | 0.2 | 11.2–12.1 (7) | 20.5–21.9 (4) | |
10 | 12 | 658 | 593 | 4 | 0–1.9 | 11.5–12.9 (11) | 20.9–22.7 (4) | |
11 | 5 | 630 | 615 | 4 | 0–1.1 | 11.5–12.9 (10) | 19.5–19.7 (26) | |
12 | 23 | 658 | 606 | 16 | 0–1.3 | 8.2–9.7 (13) | 19.1–20.5 (2) | |
13 | 26 | 1959_13 | 658 | 597 | 14 | 0–1.9 | 8.2–9.7 (12) | 19.5–21.3 (15) |
14 | 18 | 658 | 615 | 5 | 0–0.3 | 16.0–17.4 (1) | 20.1–21.1 (24) | |
15 | 15 | 658 | 567 | 4 | 0–0.5 | 17.2–18.6 (6) | 19.5–21.8 (16) | |
16 | 55 | 2325_16 | 658 | 579 | 48 | 0–2.4 | 12.3–14.0 (5) | 19.5–21.8 (15) |
17 | 1 | NA | NA | 1 | NA | 14.6–15.6 (6) | 20.6–21.4 (20) | |
18 | 3 | 627 | 624 | 3 | 0.5–0.6 | 13.0–14.3 (10) | 20.7–21.4 (4) | |
19 | 1 | NA | NA | 1 | NA | 12.1–12.5 (10) | 19.6–20.8 (3) | |
20/28 | 7 | 630 | 621 | 2 | 0–3.4 | 12.1–13.2 (21) | 20.4–22.0 (22) | |
21 | 18 | 658 | 585 | 2 | 0–0.3 | 12.0–13.2 (20) | 20.1–22.4 (3) | |
22 | 1 | NA | NA | 1 | NA | 13.1–13.6 (25) | 20.4–22.0 (20) | |
23 | 1 | NA | NA | 1 | NA | 17.4–18.9 (16) | 22.9 (24) | |
24 | 5 | 618 | 510 | 2 | 0–0.02 | 16.0–17.1 (25) | 22.9 (23) | |
25 | 4 | 624 | 567 | 2 | 0–0.8 | 13.1–13.6 (22) | 20.7–21.7 (23) | |
26 | 1 | NA | NA | 1 | NA | 9.9–10.7 (4) | 22.1 (23) | |
27 | 1 | NA | NA | 1 | NA | 11.1–12.3 (4) | 20.7–21.8 (10) |