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. 2018 Jun 20;8:9407. doi: 10.1038/s41598-018-27681-x

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© The Author(s) 2018

Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.

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Differences in microbial community structure within and between different Daphnia genotypes. Principal Coordinate Analysis based on (a) Weighted and (b) Unweighted UniFrac Distances that were rarified and jacknifed at equal sequence depth of 3893. Similar symbol represents samples belonging to the same Daphnia genotype. Microbial composition differs by Daphnia genotypes as shown by ANOSIM (Weighted UniFrac: R = 0.22, p = 0.016; Unweighted UniFrac: R = 0.50, p = 0.001) and ADONIS (Weighted UniFrac: R² = 0.42, p = 0.007; Unweighted UniFrac: ADONIS, R² = 0.39, p = 0.001) statistical analyses with 999 permutations. Polygons show the distinct microbiome between Daphnia genotypes with opposite resistotypes to four Pasteuria pathogen. Red polygon represents the microbiome of Hungary clone (SSSS) and black polygon represents the microbiome of Germany clone (RRRR).