Figure - PMC

Skip to main content

An official website of the United States government

Here's how you know

Here's how you know

Official websites use .gov
A .gov website belongs to an official government organization in the United States.

Secure .gov websites use HTTPS
A lock ( ) or https:// means you've safely connected to the .gov website. Share sensitive information only on official, secure websites.

View full-text article in PMC

. 2018 Jun 20;19:234. doi: 10.1186/s12859-018-2243-x

Search in PMC
Search in PubMed
View in NLM Catalog
Add to search

© The Author(s). 2018

Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated.

PMC Copyright notice

Fig. 3 — Chromosome-scale ARKS scaffolding of a NA12878 10xG Supernova assembly. Scaftigs from the NG85 scaffolds of the baseline NA12878 Supernova assembly (blue) and the assembly following ARKS scaffolding (−k100 -j0.5 -c5 -e30000 -z3000 -m50–6000 -r0.05 -a0.5) (green) were aligned to GRCh38 using BWA mem [18]. The ideogram was generated using the R package chromPlot [25]. For each assembly, alternating shades represent different scaffolds. Red bands on the reference chromosomes denote gaps in the reference assembly