Table 1.
Statistic estimates according to different models for additional treatments with different DFE implementations (see the DFE descriptions in figure 1), different recombination rate and severeness of bottlenecks.
| scenario | true α | αGammG | dN/dS | πn/πs | true ωa | ωaGammG | true ωna | ωnaGammaG | |
|---|---|---|---|---|---|---|---|---|---|
| temperate species | DFE C | 0.58 [0.52;0.66] |
0.61 [0.40;0.77] |
0.15 [0.12;0.18] |
0.079 [0.063;0.097] |
0.085 [0.069;0.10] |
0.090 [0.056;0.13] |
0.062 [0.046;0.081] |
0.057 [0.038;0.079] |
| DFE B | 0 [0;0] |
0.16 [−0.030;0.33] |
0.34 [0.31;0.37] |
0.34 [0.29;0.38] |
0 [0;0] |
0.054 [−0.0094;0.11] |
0.34 [0.31;0.37] |
0.28 [0.22;0.32] |
|
| DFE A N-low = 1000 |
0 [0;0] |
0.69 [0.53;0.97] |
0.099 [0.082;0.12] |
0.056 [0.044;0.067] |
0 [0;0] |
0.069 [0.046;0.096] |
0.10 [0.082;0.12] |
0.030 [0.0034;0.043] |
|
| alpine species | DFE C | 0.83 [0.79;0.87] |
0.81 [0.73;0.98] |
0.27 [0.25;0.30] |
0.071 [0.055;0.084] |
0.23 [0.20;0.25] |
0.22 [0.12;0.28] |
0.048 [0.034;0.059] |
0.051 [0.0068;0.071] |
| DFE B | 0 [0;0] |
0.084 [−0.074;0.24] |
0.31 [0.28;0.34] |
0.33 [0.30;0.36] |
0 [0;0] |
0.027 [−0.022;0.075] |
0.31 [0.28;0.34] |
0.28 [0.24;0.32] |
|
| DFE A N-low = 1000 |
0 [0;0] |
0.48 [0.29;0.72] |
0.067 [0.055;0.077] |
0.054 [0.042;0.065] |
0 [0;0] |
0.032 [0.019;0.051] |
0.067 [0.055;0.077] |
0.035 [0.019;0.048] |
|
| stable N | DFE C | 0.73 [0.72;0.75] |
0.65 [0.60;0.72] |
0.23 [0.22;0.24] |
0.10 [0.092;0.11] |
0.17 [0.16;0.18] |
0.15 [0.14;0.16] |
0.062 [0.059;0.065] |
0.080 [0.064;0.094] |
| DFE A higher recombination rate |
0 [0;0] |
0.0022 [−0.21;0.15] |
0.034 [0.030;0.037] |
0.056 [0.053;0.059] |
0 [0;0] |
0.00019 [−6.5 × 10−3;5.5 × 10−3] |
0.034 [0.030;0.037] |
0.034 [0.029;0.038] |
|
| DFE C higher recombination rate |
0.90 [0.90;0.91] |
0.87 [0.85;0.90] |
0.41 [0.40;0.42] |
0.069 [0.064;0.074] |
0.37 [0.36;0.38] |
0.36 [0.34;0.38] |
0.040 [0.037;0.043] |
0.051 [0.044;0.060] |