Table 1. Summary statistics of the three positive historic samples.
| Individual | 94A | 94B | 133 | |||
|---|---|---|---|---|---|---|
| DNA analyzed | treponemal | mitochondrial | treponemal | mitochondrial | treponemal | mitochondrial |
| Mapped reads | 74827 | 21074 | 128419 | 29157 | 71524 | 32142 |
| Average coverage | 4.4125 | 93.44 | 7.7267 | 154.50 | 3.2514 | 160.00 |
| Genome coverage ≥ 3fold | 74.31% | 99.98% | 93.42% | 100% | 57.28% | 100% |
| DNA damage 1st base 5’ | 0.1098 | 0.1159 | 0.1029 | 0.1098 | 0.1674 | 0.1582 |
| DNA damage 1st base 3’ | 0.1125 | 0.1196 | 0.0993 | 0.0956 | 0.1753 | 0.168 |
| Contamination | NA | 0.002 | NA | 0.002 | NA | 0.002 |
| Haplogroup | NA | D1i2 | NA | D1i2 | NA | H1c+152 |
Mapping statistics reported by the EAGER pipeline for the three historic samples. The table includes total number of mapped reads, average coverage, percent of the genome covered at 3 fold coverage and the DNA damage for the 1st base at the 5’ end and 3’ end for both treponemal and human mitochondrial DNA. In addition, the estimated amount of contamination and the haplogroup is added for the human mitochondrial DNA.