Table 3. Up to top 4 GO annotation clusters for optimal upregulation modules.
P-values adjusted by false discovery rate.
| Mod | Clstr | GO Biological Process | p-value | GO Molecular Function | p-value | GO Cellular Component | p-value |
|---|---|---|---|---|---|---|---|
| A | 1 | GO:0006270~DNA replication initiation | 0.00023 | GO:0003678~DNA helicase activity | 0.00001 | GO:0042555~MCM complex | 0.00001 |
| GO:0005524~ATP binding | 0.71542 | GO:0003677~DNA binding | 0.03613 | GO:0005634~nucleus | 0.38764 | ||
| A | 2 | GO:0006412~translation | 0.99986 | GO:0003735~structural constituent of ribosome | 0.99991 | GO:0005840~ribosome | 0.99762 |
| A | 3 | - | - | GO:0046872~metal ion binding | 1.00000 | - | - |
| GO:0003676~nucleic acid binding | 1.00000 | ||||||
| A | 4 | - | - | - | - | GO:0016021~integral component of membrane | 1.00000 |
| B | 1 | GO:0006633~fatty acid biosynthetic process | 0.07022 | GO:0102337~3-oxo-cerotoyl-CoA synthase activity | 0.00129 | - | - |
| GO:0102336~3-oxo-arachidoyl-CoA synthase activity | 0.00129 | ||||||
| GO:0102338~3-oxo-lignoceronyl-CoA synthase activity | 0.00129 | ||||||
| B | 2 | - | - | GO:0008234~cysteine-type peptidase activity | 0.03762 | - | - |
| B | 3 | GO:0008152~metabolic process | 0.12891 | GO:0003824~catalytic activity | 0.11434 | - | - |
| B | 4 | GO:0000398~mRNA splicing, via spliceosome | 0.37213 | - | - | GO:0005681~spliceosomal complex | 0.03948 |
| C | 1 | - | - | GO:0005524~ATP binding | 0.99567068 | - | - |
| C | 2 | - | - | - | - | GO:0016021~integral component of membrane | 0.999934875 |