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Gene set enrichment analysis of differentially expressed genes in SUM149 cells cultured in Matrigel compared to monolayer using gene sets clinically relevant to TNBC.
| Gene set | Number of genes | Efron-Tibshirani’s GSA test p value | Direction of overexpression |
|---|---|---|---|
| EMT | 14 | <0.001 | Matrigel |
| IKS | 15 | 0.466 | Matrigel |
| MKS | 12 | 0.397 | Matrigel |
| CL | 19 | 0.096 | Monolayer |
| GGI | 128 | 0.21 | Monolayer |
