Table 4. Molecular Targets from the Pull-down Assay Using the Bisamide Probes in SK-OV-3 Cell Lysatea.
protein | protein EC50 (μM)b | 26 AC50 (μM)c | 26Kiapp (μM)d | 17 AC50 (μM)c | 17 Kiapp (μM)d | 28 AC50 (μM)c |
---|---|---|---|---|---|---|
GSK3β | 1.3 | 1.2 | NA | 10 | NAe | NAb |
Pirin | 1.3 | 1.5 | 0.028 | 10 | 0.19 | NAb |
(A) SK-OV-3 cell lysate protein binding curves for immobilized 29. (B) Protein displacement curves for pyrrolidine 26. Curves are an average of two different mixing conditions. EC50 and AC50 are determined from analysis of the curves without limits.
EC50 is the apparent immobilized bisamide probe concentration at which 50% of the available protein is bound. The probe bisamide is assumed to be >10-fold molar excess over proteins in the lysate.
AC50 is the apparent bisamide concentration at which 50% of the protein is displaced from the immobilized bisamide probe. At least 2-fold enrichment of bound proteins when compared to the matrix.
Kiapp values are estimated using the Cheng–Prusoff equation, apparent [29-immobilized] = 67 μM,52 assuming no mass transport limitation, interactions are purely competitive and all interactions are direct.
Not applicable (NA). Kiapp cannot be calculated if the interaction with the probe is indirect.