Table II.

Characteristics of the differentially expressed autophagy-related genes by using edgeR (tumor vs. normal).

Gene symbol	Entrez ID	logFC	Regulation	P-value	FDR
PRKCQ	5588	−1.23797	Down	6.81E-51	1.59E-48
BID	637	1.879533	Up	1.39E-49	1.62E-47
DNAJB1	3337	−1.3017	Down	2.27E-49	1.76E-47
SERPINA1	5265	4.544121	Up	3.44E-46	2.00E-44
JUN	3725	−1.74985	Down	2.82E-41	1.31E-39
BCL2	596	−1.48235	Down	8.73E-40	3.39E-38
ITGA3	3675	1.639519	Up	5.04E-39	1.68E-37
CX3CL1	6376	1.314813	Up	8.86E-36	2.58E-34
ITPR1	3708	−1.85687	Down	4.25E-35	1.10E-33
BCL2L1	598	1.139524	Up	1.20E-34	2.80E-33
BAX	581	1.043169	Up	2.69E-33	5.22E-32
EVA1A	84141	2.717545	Up	5.52E-31	9.19E-30
TP53INP2	58476	−1.02698	Down	6.57E-28	1.02E-26
CDKN2A	1029	3.021786	Up	1.16E-27	1.59E-26
PPP1R15A	23645	−1.14889	Down	2.55E-27	3.30E-26
DRAM1	55332	1.470791	Up	6.77E-27	8.30E-26
DIRAS3	9077	2.089879	Up	1.54E-26	1.80E-25
ITGB4	3691	1.972199	Up	8.83E-26	9.80E-25
FOS	2353	−1.53364	Down	1.92E-20	1.60E-19
DAPK2	23604	1.544573	Up	2.12E-20	1.71E-19
SPHK1	8877	1.226448	Up	4.12E-20	3.10E-19
CTSB	1508	1.020784	Up	1.17E-18	7.56E-18
IL24	11009	−1.41312	Down	2.78E-18	1.75E-17
CDKN1A	1026	1.033733	Up	6.07E-15	2.89E-14
TP63	8626	2.410479	Up	3.43E-14	1.40E-13
MAP1LC3C	440738	−1.22583	Down	3.57E-13	1.41E-12
CCL2	6347	−1.21423	Down	9.06E-13	3.35E-12
CXCR4	7852	−1.10962	Down	1.51E-12	5.51E-12
HSPB8	26353	−1.03221	Down	2.29E-10	7.50E-10
ATG9B	285973	1.099005	Up	5.72E-08	1.42E-07
GRID2	2895	−1.04415	Down	7.09E-06	1.33E-05

logFC, log (Fold change); FDR, false discovery rate.