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. 2018 Apr 9;23(4):857. doi: 10.3390/molecules23040857

Table 4.

Codon usage in the T. paniculatum cp genome.

Amino Acid Codon Count RSCU Amino Acid Codon Count RSCU Amino Acid Codon Count RSCU Amino Acid Codon Count RSCU
Phe UUU(F) 975 1.3 Ser UCU(S) 556 1.67 Tyr UAU(Y) 779 1.61 Stop UGA(*) 20 0.72
Phe UUC(F) 527 0.7 Ser UCC(S) 331 0.99 Tyr UAC(Y) 190 0.39 Trp UGG(W) 460 1
Leu UUA(L) 854 1.84 Ser UCA(S) 408 1.22 Stop UAA(*) 46 1.66 Ala GCU(A) 615 1.75
Leu UUG(L) 554 1.2 Ser UCG(S) 187 0.56 Stop UAG(*) 17 0.61 Ala GCC(A) 234 0.66
Leu CUU(L) 601 1.3 Ser AGU(S) 393 1.18 His CAU(H) 448 1.49 Ala GCA(A) 416 1.18
Leu CUC(L) 179 0.39 Ser AGC(S) 127 0.38 His CAC(H) 155 0.51 Ala GCG(A) 144 0.41
Leu CUA(L) 408 0.88 Pro CCU(P) 426 1.6 Gln CAA(Q) 729 1.54 Arg CGU(R) 360 1.36
Leu CUG(L) 184 0.4 Pro CCC(P) 200 0.75 Gln CAG(Q) 216 0.46 Arg CGC(R) 92 0.35
Ile AUU(I) 1130 1.5 Pro CCA(P) 299 1.12 Asn AAU(N) 960 1.53 Arg CGA(R) 366 1.38
Ile AUC(I) 410 0.54 Pro CCG(P) 143 0.54 Asn AAC(N) 297 0.47 Arg CGG(R) 120 0.45
Ile AUA(I) 718 0.95 Thr ACU(T) 531 1.61 Lys AAA(K) 1061 1.5 Arg AGA(R) 475 1.79
Met AUG(M) 607 1 Thr ACC(T) 250 0.76 Lys AAG(K) 357 0.5 Arg AGG(R) 175 0.66
Val GUU(V) 514 1.48 Thr ACA(T) 402 1.22 Asp GAU(D) 883 1.66 Gly GGU(G) 552 1.26
Val GUC(V) 160 0.46 Thr ACG(T) 134 0.41 Asp GAC(D) 184 0.34 Gly GGC(G) 190 0.43
Val GUA(V) 522 1.5 Cys UGU(C) 235 1.55 Glu GAA(E) 1041 1.53 Gly GGA(G) 712 1.62
Val GUG(V) 194 0.56 Cys UGC(C) 68 0.45 Glu GAG(E) 323 0.47 Gly GGG(G) 302 0.69

RSCU: Relative synonymous codon usage. RSCU > 1 are highlighted in bold. * indicates stop codon.