Table 4.
Amino Acid | Codon | Count | RSCU | Amino Acid | Codon | Count | RSCU | Amino Acid | Codon | Count | RSCU | Amino Acid | Codon | Count | RSCU |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Phe | UUU(F) | 975 | 1.3 | Ser | UCU(S) | 556 | 1.67 | Tyr | UAU(Y) | 779 | 1.61 | Stop | UGA(*) | 20 | 0.72 |
Phe | UUC(F) | 527 | 0.7 | Ser | UCC(S) | 331 | 0.99 | Tyr | UAC(Y) | 190 | 0.39 | Trp | UGG(W) | 460 | 1 |
Leu | UUA(L) | 854 | 1.84 | Ser | UCA(S) | 408 | 1.22 | Stop | UAA(*) | 46 | 1.66 | Ala | GCU(A) | 615 | 1.75 |
Leu | UUG(L) | 554 | 1.2 | Ser | UCG(S) | 187 | 0.56 | Stop | UAG(*) | 17 | 0.61 | Ala | GCC(A) | 234 | 0.66 |
Leu | CUU(L) | 601 | 1.3 | Ser | AGU(S) | 393 | 1.18 | His | CAU(H) | 448 | 1.49 | Ala | GCA(A) | 416 | 1.18 |
Leu | CUC(L) | 179 | 0.39 | Ser | AGC(S) | 127 | 0.38 | His | CAC(H) | 155 | 0.51 | Ala | GCG(A) | 144 | 0.41 |
Leu | CUA(L) | 408 | 0.88 | Pro | CCU(P) | 426 | 1.6 | Gln | CAA(Q) | 729 | 1.54 | Arg | CGU(R) | 360 | 1.36 |
Leu | CUG(L) | 184 | 0.4 | Pro | CCC(P) | 200 | 0.75 | Gln | CAG(Q) | 216 | 0.46 | Arg | CGC(R) | 92 | 0.35 |
Ile | AUU(I) | 1130 | 1.5 | Pro | CCA(P) | 299 | 1.12 | Asn | AAU(N) | 960 | 1.53 | Arg | CGA(R) | 366 | 1.38 |
Ile | AUC(I) | 410 | 0.54 | Pro | CCG(P) | 143 | 0.54 | Asn | AAC(N) | 297 | 0.47 | Arg | CGG(R) | 120 | 0.45 |
Ile | AUA(I) | 718 | 0.95 | Thr | ACU(T) | 531 | 1.61 | Lys | AAA(K) | 1061 | 1.5 | Arg | AGA(R) | 475 | 1.79 |
Met | AUG(M) | 607 | 1 | Thr | ACC(T) | 250 | 0.76 | Lys | AAG(K) | 357 | 0.5 | Arg | AGG(R) | 175 | 0.66 |
Val | GUU(V) | 514 | 1.48 | Thr | ACA(T) | 402 | 1.22 | Asp | GAU(D) | 883 | 1.66 | Gly | GGU(G) | 552 | 1.26 |
Val | GUC(V) | 160 | 0.46 | Thr | ACG(T) | 134 | 0.41 | Asp | GAC(D) | 184 | 0.34 | Gly | GGC(G) | 190 | 0.43 |
Val | GUA(V) | 522 | 1.5 | Cys | UGU(C) | 235 | 1.55 | Glu | GAA(E) | 1041 | 1.53 | Gly | GGA(G) | 712 | 1.62 |
Val | GUG(V) | 194 | 0.56 | Cys | UGC(C) | 68 | 0.45 | Glu | GAG(E) | 323 | 0.47 | Gly | GGG(G) | 302 | 0.69 |
RSCU: Relative synonymous codon usage. RSCU > 1 are highlighted in bold. * indicates stop codon.