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Sequence alignment of representative members from three sets of related transposase genes: HP0437 represents set (A), HP0414 represents set (B) and jhp0827 represents set (C) (identifiers of the set members are shown in boxes). The three sets are detected by GeneRAGE as a single cluster, while BLAST fails to detect them as a single family due to the relatively low similarity between sets (A) and (C). For more details, please see text.
