Table 2.
Predicted SOX2 and OCT4A peptides that bind to HLA-A.
| Pos | HLA | Peptide | Score | % Rank | BindLevel |
|---|---|---|---|---|---|
| SOX2 | |||||
| 275 | HLA-A*02:01 | SMYLPGAEV | 0.669833 | 0.2687 | ≤SB |
| 131 | HLA-A*02:01 | LLAPGGNSM | 0.42905 | 0.6673 | ≤WB |
| 58 | HLA-A*02:01 | KMAQENPKM | 0.375814 | 0.7882 | ≤WB |
| 125 | HLA-A*02:01 | YTLPGGLLA | 0.257884 | 1.1925 | ≤WB |
| 236 | HLA-A*02:01 | ALGSMGSVV | 0.203653 | 1.468 | ≤WB |
| 216 | HLA-A*02:01 | YMNGSPTYS | 0.146827 | 1.9276 | ≤WB |
| OCT4A | |||||
| 268 | HLA-A*02:01 | GLEKDVVRV | 0.719995 | 0.2203 | ≤SB |
| 249 | HLA-A*02:01 | FLQCPKPTL | 0.645456 | 0.2944 | ≤SB |
| 72 | HLA-A*02:01 | GMAYCGPQV | 0.492133 | 0.5388 | ≤WB |
| 203 | HLA-A*02:01 | LLQKWVEEA | 0.419854 | 0.6892 | ≤WB |
| 163 | HLA-A*02:01 | TQADVGLTL | 0.372758 | 0.795 | ≤WB |
| 332 | HLA-A*02:01 | ALYSSVPFP | 0.166148 | 1.7452 | ≤WB |
| 93 | HLA-A*02:01 | SQPEGEAGV | 0.164799 | 1.7569 | ≤WB |
Peptide length 9; rank threshold for strong binding peptide 0.500; rank threshold for weak binding peptide 2.000; SB, strong binding; WB, weak binding; predicted peptides were generated using NetMHCpan Version 4.0 (http://www.cbs.dtu.dk/services/NetMHCpan/).