Table 1.

Characteristics and phenotype data for Campylobacter concisus strains used in the study

Strain	Patient	Patient group	Sample type	Diagnosis	Country of origin	Sequencing platform
2009–118452	2009–118452	Adult	Faecal	Crohn’s disease	Denmark	IM
2009–119100	2009–119100	Adult	Faecal	Collagenous colitis	Denmark	IM
2009–129008	2009–129008	Adult	Faecal	Gastroenteritis	Denmark	IM
2009–130586	2009–130586	Adult	Faecal	Gastroenteritis	Denmark	IM
2009–158448	2009–158448	Adult	Faecal	Collagenous colitis	Denmark	IM
2009–173039	2009–173039	Adult	Faecal	Gastroenteritis	Denmark	IM
2009–42653	2009–42653	Adult	Faecal	Gastroenteritis	Denmark	IM
2009–75710	2009–75710	Adult	Faecal	Gastroenteritis	Denmark	IM
2009–75775	2009–75775	Adult	Faecal	Crohn’s disease	Denmark	IM
2009–86120	2009–86120	Adult	Faecal	Bloody diarrhoea	Denmark	IM
2009–91522	2009–91522	Adult	Faecal	Crohn’s disease	Denmark	IM
2010–112100-F	2010–112100	Adult	Faecal	Crohn’s disease	Denmark	IM
2010–112100-O	2010–112100	Adult	Saliva	Crohn’s disease	Denmark	IM
2010–112708	2010–112708	Adult	Faecal	Bloody diarrhoea	Denmark	IM
2010–112758	2010–112758	Adult	Faecal	Gastroenteritis	Denmark	IM
2010–112825	2010–112825	Adult	Faecal	Gastroenteritis	Denmark	IM
2010–113332-F	2010–113332	Adult	Faecal	Gastroenteritis	Denmark	IM
2010–113332-O	2010–113332	Adult	Saliva	Gastroenteritis	Denmark	IM
2010–113862	2010–113862	Adult	Faecal	Gastroenteritis	Denmark	IM
2010–113862-O	2010–113862	Adult	Saliva	Gastroenteritis	Denmark	IM
2010–115605-F	2010–115605	Adult	Faecal	Gastroenteritis	Denmark	IM
2010–115605-O	2010–115605	Adult	Saliva	Gastroenteritis	Denmark	IM
2010–131105	2010–131105	Adult	Faecal	Gastroenteritis	Denmark	IM
2010–16206	2010–16206	Adult	Faecal	Collagenous colitis	Denmark	IM
2010–164712	2010–164712	Adult	Faecal	Bloody diarrhoea	Denmark	IM
2010–1718	2010–1718	Adult	Faecal	Crohn’s disease	Denmark	IM
2010–25654-F	2010–25654	Adult	Faecal	Bloody diarrhoea	Denmark	IM
2010–25654-O	2010–25654	Adult	Saliva	Bloody diarrhoea	Denmark	IM
2010–30795	2010–30795	Adult	Faecal	Gastroenteritis	Denmark	IM
2010–30800	2010–30800	Adult	Faecal	Lymphocytic colitis	Denmark	IM
2010–31374	2010–31374	Adult	Faecal	Bloody diarrhoea	Denmark	IM
2010–33561	2010–33561	Adult	Faecal	Crohn’s disease	Denmark	IM
2010–34330	2010–34330	Adult	Faecal	Crohn’s disease	Denmark	IM
2010–347972	2010–347972	Adult	Faecal	Gastroenteritis	Denmark	IM
2010–36743	2010–36743	Adult	Faecal	Gastroenteritis	Denmark	IM
2010–378007-F	2010–378007	Adult	Faecal	Gastroenteritis	Denmark	IM
2010–378007-O	2010–378007	Adult	Saliva	Gastroenteritis	Denmark	IM
2010–43100	2010–43100	Adult	Faecal	Gastroenteritis	Denmark	IM
2010–6073	2010–6073	Adult	Faecal	Gastroenteritis	Denmark	IM
2010–8194	2010–8194	Adult	Faecal	Gastroenteritis	Denmark	IM
2010–88823	2010–88823	Adult	Faecal	Gastroenteritis	Denmark	IM
2012–164712	2012–164712	Adult	Faecal	Bloody diarrhoea	Denmark	IM
2012–191940	2012–191940	Adult	Faecal	Gastroenteritis	Denmark	IM
2012–37302	2012–37302	Adult	Faecal	Gastroenteritis	Denmark	IM
2013–101463	2013–101463	Adult	Faecal	Gastroenteritis	Denmark	IM
2013–39845	2013–39845	Adult	Faecal	Gastroenteritis	Denmark	IM
2013–42088	2013–42088	Adult	Faecal	Gastroenteritis	Denmark	IM
2013–87946	2013–87946	Adult	Faecal	Gastroenteritis	Denmark	IM
B124_Slimy-small	B124	Paediatric	Biopsy	Crohn’s disease	UK	IM
B124_Small-clear	B124	Paediatric	Biopsy	Crohn’s disease	UK	IM + PB-RSII
B124_Small-grey	B124	Paediatric	Biopsy	Crohn’s disease	UK	IM
B38_Tiny-mucoid	B38	Paediatric	Biopsy	Crohn’s disease	UK	IM + PB-RSII
B124_Slimy-large	B124	Paediatric	Biopsy	Crohn’s disease	UK	IM

IM Illumina MiSeq, PB-RSII PacBio-RSII