Table 1.
Strain | Patient | Patient group | Sample type | Diagnosis | Country of origin | Sequencing platform |
---|---|---|---|---|---|---|
2009–118452 | 2009–118452 | Adult | Faecal | Crohn’s disease | Denmark | IM |
2009–119100 | 2009–119100 | Adult | Faecal | Collagenous colitis | Denmark | IM |
2009–129008 | 2009–129008 | Adult | Faecal | Gastroenteritis | Denmark | IM |
2009–130586 | 2009–130586 | Adult | Faecal | Gastroenteritis | Denmark | IM |
2009–158448 | 2009–158448 | Adult | Faecal | Collagenous colitis | Denmark | IM |
2009–173039 | 2009–173039 | Adult | Faecal | Gastroenteritis | Denmark | IM |
2009–42653 | 2009–42653 | Adult | Faecal | Gastroenteritis | Denmark | IM |
2009–75710 | 2009–75710 | Adult | Faecal | Gastroenteritis | Denmark | IM |
2009–75775 | 2009–75775 | Adult | Faecal | Crohn’s disease | Denmark | IM |
2009–86120 | 2009–86120 | Adult | Faecal | Bloody diarrhoea | Denmark | IM |
2009–91522 | 2009–91522 | Adult | Faecal | Crohn’s disease | Denmark | IM |
2010–112100-F | 2010–112100 | Adult | Faecal | Crohn’s disease | Denmark | IM |
2010–112100-O | 2010–112100 | Adult | Saliva | Crohn’s disease | Denmark | IM |
2010–112708 | 2010–112708 | Adult | Faecal | Bloody diarrhoea | Denmark | IM |
2010–112758 | 2010–112758 | Adult | Faecal | Gastroenteritis | Denmark | IM |
2010–112825 | 2010–112825 | Adult | Faecal | Gastroenteritis | Denmark | IM |
2010–113332-F | 2010–113332 | Adult | Faecal | Gastroenteritis | Denmark | IM |
2010–113332-O | 2010–113332 | Adult | Saliva | Gastroenteritis | Denmark | IM |
2010–113862 | 2010–113862 | Adult | Faecal | Gastroenteritis | Denmark | IM |
2010–113862-O | 2010–113862 | Adult | Saliva | Gastroenteritis | Denmark | IM |
2010–115605-F | 2010–115605 | Adult | Faecal | Gastroenteritis | Denmark | IM |
2010–115605-O | 2010–115605 | Adult | Saliva | Gastroenteritis | Denmark | IM |
2010–131105 | 2010–131105 | Adult | Faecal | Gastroenteritis | Denmark | IM |
2010–16206 | 2010–16206 | Adult | Faecal | Collagenous colitis | Denmark | IM |
2010–164712 | 2010–164712 | Adult | Faecal | Bloody diarrhoea | Denmark | IM |
2010–1718 | 2010–1718 | Adult | Faecal | Crohn’s disease | Denmark | IM |
2010–25654-F | 2010–25654 | Adult | Faecal | Bloody diarrhoea | Denmark | IM |
2010–25654-O | 2010–25654 | Adult | Saliva | Bloody diarrhoea | Denmark | IM |
2010–30795 | 2010–30795 | Adult | Faecal | Gastroenteritis | Denmark | IM |
2010–30800 | 2010–30800 | Adult | Faecal | Lymphocytic colitis | Denmark | IM |
2010–31374 | 2010–31374 | Adult | Faecal | Bloody diarrhoea | Denmark | IM |
2010–33561 | 2010–33561 | Adult | Faecal | Crohn’s disease | Denmark | IM |
2010–34330 | 2010–34330 | Adult | Faecal | Crohn’s disease | Denmark | IM |
2010–347972 | 2010–347972 | Adult | Faecal | Gastroenteritis | Denmark | IM |
2010–36743 | 2010–36743 | Adult | Faecal | Gastroenteritis | Denmark | IM |
2010–378007-F | 2010–378007 | Adult | Faecal | Gastroenteritis | Denmark | IM |
2010–378007-O | 2010–378007 | Adult | Saliva | Gastroenteritis | Denmark | IM |
2010–43100 | 2010–43100 | Adult | Faecal | Gastroenteritis | Denmark | IM |
2010–6073 | 2010–6073 | Adult | Faecal | Gastroenteritis | Denmark | IM |
2010–8194 | 2010–8194 | Adult | Faecal | Gastroenteritis | Denmark | IM |
2010–88823 | 2010–88823 | Adult | Faecal | Gastroenteritis | Denmark | IM |
2012–164712 | 2012–164712 | Adult | Faecal | Bloody diarrhoea | Denmark | IM |
2012–191940 | 2012–191940 | Adult | Faecal | Gastroenteritis | Denmark | IM |
2012–37302 | 2012–37302 | Adult | Faecal | Gastroenteritis | Denmark | IM |
2013–101463 | 2013–101463 | Adult | Faecal | Gastroenteritis | Denmark | IM |
2013–39845 | 2013–39845 | Adult | Faecal | Gastroenteritis | Denmark | IM |
2013–42088 | 2013–42088 | Adult | Faecal | Gastroenteritis | Denmark | IM |
2013–87946 | 2013–87946 | Adult | Faecal | Gastroenteritis | Denmark | IM |
B124_Slimy-small | B124 | Paediatric | Biopsy | Crohn’s disease | UK | IM |
B124_Small-clear | B124 | Paediatric | Biopsy | Crohn’s disease | UK | IM + PB-RSII |
B124_Small-grey | B124 | Paediatric | Biopsy | Crohn’s disease | UK | IM |
B38_Tiny-mucoid | B38 | Paediatric | Biopsy | Crohn’s disease | UK | IM + PB-RSII |
B124_Slimy-large | B124 | Paediatric | Biopsy | Crohn’s disease | UK | IM |
IM Illumina MiSeq, PB-RSII PacBio-RSII