Table 1.
Summary of genome statistics for the putative members of the ‘Ca. Luxescamonaceae’
| Genome ID | PufM presence | RbcL presence | No. of contigs | Total length (bp) | Max. contig length (bp) | N50 | Mean length (bp) | GC (%) | No. of predicted CDSa | Est. completeness (%)b | Est. contamination (Est. strain heterogeneity) (%)b |
|---|---|---|---|---|---|---|---|---|---|---|---|
| NAT185c,d | + | + | 90 | 2,235,338 | 199,971 | 38,700 | 24,761 | 38.0 | 2,198 | 94.77 | 0.39 (66.67) |
| NAT102c,d | + | + | 105 | 1,995,055 | 67,548 | 22,200 | 18,995 | 37.7 | 1,936 | 86.20 | 0.67 (0.00) |
| NP970c,d | + | + | 119 | 2,435,294 | 84,644 | 32,121 | 20,380 | 36.1 | 2,359 | 82.71 | 2.00 (33.33) |
| SAT68c,d | + | + | 192 | 2,295,506 | 62,884 | 13,375 | 11,880 | 37.1 | 2,351 | 80.00 | 5.53 (71.88) |
| MED800c,d | + | + | 176 | 2,162,263 | 55,714 | 13,593 | 12,191 | 37.0 | 2,219 | 69.75 | 2.80 (100.00) |
| EAC638c,d | + | + | 197 | 2,499,174 | 80,634 | 14,967 | 12,620 | 30.9 | 2,599 | 66.59 | 1.20 (100.00) |
| TARA-MED-MAG-00011d,e | + | + | 100 | 1,971,082 | 70,540 | 31,135 | 19,710 | 37.7 | 1,949 | 88.20 | 0.40 (0.00) |
| TARA-MED-MAG-00076e | + | + | 86 | 1,475,546 | 86,697 | 22,424 | 17,157 | 37.4 | 1,475 | 75.60 | 0.53 (50.00) |
| TARA-ANE-MAG-00073d,e | + | + | 142 | 811,509 | 16,501 | 6438 | 5714 | 38.6 | 858 | 38.24 | 0.00 (0.00) |
| TARA-MED-MAG-00097e | − | + | 168 | 982,411 | 26,063 | 6725 | 5874 | 36.1 | 1,058 | 63.97 | 0.93 (100.00) |
| TARA-ANE-MAG-00058d,e | − | − | 136 | 907,139 | 38.673 | 7370 | 6670 | 37.6 | 966 | 59.48 | 1.16 (80.00) |
| TARA-MED-MAG-00111e | − | − | 133 | 848,198 | 26,144 | 6958 | 6377 | 34.9 | 960 | 59.27 | 1.81 (33.33) |
| TARA-PSE-MAG-00093d,e | − | − | 70 | 1,073,290 | 53,951 | 19,516 | 15,332 | 27.7 | 1,144 | 72.10 | 0.13 (100.00) |
| TARA-MED-MAG-00072e | − | − | 332 | 1,996,491 | 57,250 | 6935 | 6013 | 36.8 | 2,103 | 78.65 | 0.93 (66.67) |
| TARA-ANW-MAG-00032d,e | + | − | 211 | 1,576,546 | 29,415 | 9704 | 7471 | 39.2 | 1,674 | 73.03 | 1.20 (33.33) |
| TARA-MED-MAG-00129d,e | + | − | 259 | 1,489,684 | 20,564 | 6389 | 5751 | 39.2 | 1,579 | 50.59 | 0.00 (0.00) |
| TARA-IOS-MAG-00017e | + | − | 210 | 2,258,247 | 64,859 | 15147 | 10,753 | 38.7 | 2,269 | 91.57 | 1.10 (12.50) |
| TARA-ANE-MAG-00066e | − | + | 276 | 1,221,441 | 16,829 | 4451 | 4425 | 38.3 | 1,371 | 58.85 | 1.40 (57.14) |
N50—length of contig for which all contigs longer in length contain half of the total genome
CDS—coding DNA sequence
a Determined using Prodigal
b Determine using CheckM with the Alphaproteobacteria markers (388 markers in 250 sets)
c MAGs determined in Tully et al. [11]
d MAGs manually refined in this study
e MAGs determined in Delmont et al. [12]