General |
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AntaRNA [44, 45] |
✓ |
✓ |
✓ |
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RNAiFold [42, 43] |
✓ |
✓ |
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✓ |
Experience in biology ‘wet laboratory’ |
RNAinverse [1] |
✓ |
✓ |
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First program developed; experience in biology ‘wet laboratory’ |
NUPACK [35, 36] |
✓ |
✓ |
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Optional multistranded target structures; experience in biology ‘wet laboratory’ |
INFO-RNA [33] |
✓ |
✓ |
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RNA-SSD [34] |
✓ |
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Frnakenstein [39] |
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✓ |
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✓ |
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ERD [40, 41] |
✓ |
✓ |
✓ |
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MODENA [38] |
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✓ |
✓ |
✓ |
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Shape aware |
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IncaRNAfbinv [52] |
✓ |
✓ |
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Fragment selection enabled; experience in RNA detection |
RNAfbinv [51] |
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✓ |
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Fragment selection enabled |
RNAexinv [48] |
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✓ |
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No user-selected fragment |
Adaptive sampling |
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IncaRNAfbinv [52] |
✓ |
✓ |
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Global–local approach; experience in RNA detection |
IncaRNAtion [47] |
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✓ |
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Global–local approach |
RNA-ensign [46] |
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✓ |
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Global approach |
Specialized |
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Nanofolder [12] |
✓ |
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✓ |
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Nanostructures; multistranded RNA; experience in biology ‘wet laboratory’ |
CDSfold [54] |
✓ |
✓ |
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Design of protein-coding sequence |
RNAdesign [56] |
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✓ |
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✓ |
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EternaBot [57] |
✓ |
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Design rules set by Eterna players |
RNA-redesign [58] |
✓ |
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Three-dimensional: fixed backbone |