Table 2.

Runtimes for six selected programs (1000 runs for each of the two test cases)

Program	Time (in minutes)— Figure 2	Time (in minutes)— Figure 3
antaRNA	6.5	7.8
RNAiFold	41.4	6.4
INFO-RNA	0.5	0.8
NUPACK	37.5	217
RNAinverse	3.15	3.7
RNAexinv	231	N/A