Key resources table.
| Reagent type (species) or resource |
Designation | Source or reference | Identifiers | Additional information |
|---|---|---|---|---|
| Strain, strain background (Hydra viridissima A99) |
Hydra viridissima A99 | PMID: 16351895 | ||
| Strain, strain background (Chlorella sp. A99) |
Chlorella sp. A99 | PMID: 16351895 | NCBI BioProject ID: PRJNA412448 |
|
| Strain, strain background (Chlorella variabilis NC64A) |
Chlorella variabilis NC64A | Microbial Culture Collection at the National Institute for Environmental Studies |
NIES-2541 | |
| Strain, strain background (Coccomyxa subellipsoidea C-169) |
Coccomyxa subellipsoidea
C-169 |
Microbial Culture Collection at the National Institute for Environmental Studies |
NIES-2166 | |
| Strain, strain background (Chlamydomonas reinhardtii) |
Chlamydomonas reinhardtii | Microbial Culture Collection at the National Institute for Environmental Studies |
NIES-2235 | |
| Commercial assay or kit | TruSeq DNA LT Sample Prep Kit |
Illumina | FC-121–2001 | |
| Commercial assay or kit | Nextera Mate Pair Sample Preparation Kit |
Illumina | FC-132–1001 | |
| Commercial assay or kit | Miseq reagent kit v3 | Illumina | MS-102–3003 | |
| Commercial assay or kit | HiSeq SBS kit v4 | Illumina | FC-401–4003 | |
| Commercial assay or kit | BigDye Terminator v3.1 Cycle Sequencing Kit |
Thermo Fisher Scientific | 4337454 | |
| Commercial assay or kit | 4 × 44K Hydra viridissima A99 Custom-Made Microarray |
Agilent Technologies | NCBI GEO Platform ID: GPL23280 |
|
| Commercial assay or kit | GE Hybridization Kit and GE Wash Pack |
Agilent Technologies | 5188–5242, 5188–5327 | |
| Commercial assay or kit | High Sensitivity DNA Kit | Agilent Technologies | 5067–4626 | |
| Commercial assay or kit | RNA6000 nano kit | Agilent Technologies | 5067–1511 | |
| Commercial assay or kit | Low Input Quick Amp Labeling Kit |
Agilent Technologies | 5190–2305 | |
| Commercial assay or kit | PureLink RNA Mini Kit | Thermo Fisher Scientific | 12183018A | |
| Commercial assay or kit | Fermentas First Strand cDNA Synthesis Kit |
Thermo Fisher Scientific | K1621 | |
| Chemical compound, drug |
Trizol reagent | Thermo Fisher Scientific | 15596026 | |
| Chemical compound, drug |
AmpliTaq Gold 360 Master Mix |
Thermo Fisher Scientific | 4398901 | |
| Chemical compound, drug |
ISOPLANT II | Nippon Gene | 316–04153 | |
| Chemical compound, drug |
GoTaq qPCR Master Mix | Promega | A6002 | |
| Chemical compound, drug |
KOD FX Neo | TOYOBO | KFX-201 | |
| Software, algorithm | Feature Extraction Software |
Agilent Technologies | RRID:SCR_014963 | |
| Software, algorithm | Newbler | 454 Life Sciences, Roche Diagnostics |
RRID:SCR_011916 | |
| Software, algorithm | SSPACE | PMID: 21149342 | RRID:SCR_005056 | |
| Software, algorithm | GapCloser | PMID: 23587118 | RRID:SCR_015026 | |
| Software, algorithm | NCBI BLAST | PMID: 2231712 | RRID:SCR_004870 | |
| Software, algorithm | CEGMA | PMID: 17332020 | RRID:SCR_015055 | |
| Software, algorithm | Augustus: Gene Prediction | PMID: 16845043 | RRID:SCR_008417 | |
| Software, algorithm | Blast2GO | PMID: 16081474 | RRID:SCR_005828 | |
| Software, algorithm | Hmmer | PMID: 9918945 | RRID:SCR_005305 | |
| Software, algorithm | CLUSTALX2 | PMID: 17846036 | RRID:SCR_002909 | |
| Software, algorithm | BioEdit | Nucleic Acid Symposium Series 41, 95–98 |
RRID:SCR_007361 | |
| Software, algorithm | Njplot | Biochimie 78, 364–369 | NA | |
| Software, algorithm | OrthoFinder | PMID: 26243257 | NA |