Table 4. List of the genes differentially expressed between Hv_Sym and Hv_Apo.
Fold change of expression level determined by microarray analysis and qPCR
Table 4—source data 1. Expression level of 'Symbiosis related' genes examined by microarray and qPCR.
elife-35122-table4-data1.xlsx (12.7KB, xlsx)
DOI: 10.7554/eLife.35122.016
| Hv_Sym > Hv_Apo | ||||
|---|---|---|---|---|
| Probe name (gene ID) |
Microarray | qPCR | Gene annotation | InterProScan |
| Sym/Apo | Sym/Apo | |||
| 5168 | 9.3 | 7.4 | IPR000157 TIR_dom PTHR23097 Tumor necrosis factor receptor superfamily member |
|
| 6508 | 6.7 | 2.9 | IPR011029:DEATH-like_dom | |
| 11411 | 2.9 | 2.0 | C-type mannose receptor 2 | IPR000742 EG-like_dom IPR001304 C-type_lectin |
| 26108 | 7.2 | 7.2 | ephrin type-A receptor six isoform a | |
| rc_2417 | 5.4 | 3.5 | IPR000488 Death_domain | |
| rc_24563 | 6.1 | 6.7 | Proline-rich transmembrane protein 1 | IPR007593 CD225/Dispanin_fam PTHR14948 NG5 |
| rc_9398 | 6.2 | 5.4 | protein-kinase, interferon-inducible double stranded RNA dependent inhibitor, repressor of (P58 repressor) |
PTHR11697 general transcription factor 2-related zinc finger protein |
| Hv_Sym < Hv_Apo | ||||
|
Probe name
(gene ID) |
Microarray | qPCR | Gene Annotation | InterProScan |
| Apo/Sym | Apo/Sym | |||
| rc_10789 | 2.5 | 3.7 | endoribonuclease Dicer | IPR000999 RNase_III_dom PTHR1495 helicase-related |
| rc_12826 | 3.0 | 2.3 | interferon regulatory factor 1 | IPR001346 Interferon_reg_fact_DNA-bd_dom; IPR011991 WHTH_DNA-bd_dom PTHR11949 interferon regulatory factor |
| rc_8898 | 6.1 | 4.1 | leucine-rich repeat-containing protein 15 isoform b |
IPR001611 Leu-rich_rp PTHR24373 Toll-like receptor 9 |
| FV81RT001CSTY | 3.2 | 2.0 | astrocytic phosphoprotein PEA-15 | IPR001875 DED, IPR011029 DEATH-like_dom |
| RSASM_17752 | 4.0 | 2.1 | CD97 antigen isoform two precursor | IPR000832 GPCR_2_secretin-like PTHR12011 vasoactive intestinal polypeptide receptor 2 |